Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0535
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213...    28   4.6  
04_01_0206 + 2507827-2508705,2508844-2509902                           27   8.1  

>01_06_0371 +
           28819035-28819322,28820541-28820595,28821179-28821354,
           28821481-28821702,28821796-28822034,28822107-28822632,
           28822726-28822999,28823098-28823737,28823833-28824061,
           28824299-28824565,28824700-28824963,28825045-28825689
          Length = 1274

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 405 NCIPALLVGTISESDNNNEYDMHSFNAILDEIPGTSKAKDEESRKVDYLTSSSSARS 575
           +CI  +  G I E   ++E  M+  N +  ++    +  +EE +K+D+  S S ++S
Sbjct: 580 DCISVVQQGKIVEQGPHDELVMNP-NGVYSQLIRLQETHEEEEKKLDHHISDSRSKS 635


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 393 RAWHAIRRALIVLRGAQVSKTH----RSRLSSFSATHLSARFFSHLRLGTTHF 247
           R WH +RR+++ LR +  +KT     RSR  S S    +  +F   ++  T++
Sbjct: 326 RWWHRLRRSVLALRRSVEAKTRGSWGRSRKWSGSIGQFNLLYFRAAQVNQTNY 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,176
Number of Sequences: 37544
Number of extensions: 272771
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)