Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0535
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_59330| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_41868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 252 GSSLI*GVKRTVPIDAWLRRSSVLNGVSSIPGHLEELLTP-SLWHARLCCL 401
           G + I G K  VP++AWL ++S   G  S    L+ L T  S+ HA   C+
Sbjct: 16  GRADIEGSKSNVPMNAWLPQASYPCGNFSDTSSLKLLKTKGSIGHAFTVCI 66


>SB_59330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 340 IEDTPFKTELLLSHASIGTVLFT 272
           ++D PF+ E L+ H  IGT+L T
Sbjct: 116 VDDDPFEGEDLVQHEQIGTMLAT 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,726,187
Number of Sequences: 59808
Number of extensions: 331455
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)