Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0535
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    33   0.19 
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    29   3.1  
AC006835-2|AAF40014.1|  229|Caenorhabditis elegans Hypothetical ...    28   5.5  

>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 317 SLERCVFDTWAPRRTINALLMACQALLFVKL 409
           ++++C FD WA R  + AL   C  LL +KL
Sbjct: 176 AVDKCFFDHWADRSIMYALNFLCSGLLSIKL 206


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 394 AVCEIVFLRYSWELYRSQTTITNMICTLLMPSLMKYLEHQRQKTKN 531
           A   + F  + W  Y     ITN IC L++  + K L HQR + KN
Sbjct: 180 ATSALQFNSFLW--YMLYLKITNFICNLILLFIHKIL-HQRYRRKN 222


>AC006835-2|AAF40014.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK993.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 373 PYGMPGSAVCEIVFLRYSWELYRSQTTITNMICTLLMPSLMKYLEHQRQKTKNQGR 540
           P+G  G+A          W+ + +     +M+C  LMP  M    HQ   ++ + R
Sbjct: 59  PFGAVGAAAAASAL---PWQFHPANYPFFSMLCGPLMPPFMAPYHHQHYASRRKRR 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,134
Number of Sequences: 27780
Number of extensions: 251444
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)