Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0533
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   0.53 
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   6.6  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    24   8.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    24   8.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 427 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 254
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S    T  +  S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 377 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 270
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 318 EATNRIGLLTHEFLLDVLSDLS 383
           +A N   + +HE LL VL+DLS
Sbjct: 6   KAKNPASIFSHETLLHVLNDLS 27


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 419 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
           R+ T   +LLHD+E   Y +++++  Q   +    G    L++
Sbjct: 180 RKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQYKKLQQ 222


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 347 SQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYLQKV 219
           S  A  I +L G+T+ + R++  N  K+L   +    E  QKV
Sbjct: 24  SSIAQEIHALRGNTAAIHRYLVNNLTKNLHEVLEQSRELSQKV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,354
Number of Sequences: 5004
Number of extensions: 30470
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)