Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0533
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    32   0.23 
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   1.6  

>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 374 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 228
           T Y     +S     +  LAGHT+D+     E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 410 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 273
           T N DL H A+I  YI  E    +   ++   GHTSD + F  E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,697
Number of Sequences: 37544
Number of extensions: 171499
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)