Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0533
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.006
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 36   0.011
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.043
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.043
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              32   0.17 
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 32   0.17 
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   2.2  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  28   3.8  
SB_5548| Best HMM Match : PT (HMM E-Value=3.1)                         28   3.8  
SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 27   8.7  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = -1

Query: 386 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
           DA++T +IE  F+++Q + I+ LAGH ++LKR
Sbjct: 309 DAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 14/42 (33%), Positives = 31/42 (73%)
 Frame = -1

Query: 416 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
           E+ K ++   DA+++ +IE+ F+++Q ++IR L+G+ + LK+
Sbjct: 94  ELEKTAEKNGDAQMSDFIEDHFLTEQVESIRELSGYIAVLKK 135


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 15/41 (36%), Positives = 28/41 (68%)
 Frame = -1

Query: 389 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 267
           +DA++  +IEE F+++Q D+I+ L+ + S L+R   E  G+
Sbjct: 39  NDAQMQDFIEETFLNEQMDSIKQLSNYVSTLRRLGGEGLGE 79


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = -1

Query: 386 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
           D+++  ++E  ++++Q + I+ LAGH ++LKR
Sbjct: 241 DSQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = -1

Query: 386 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
           D+++  ++E  ++++Q + I+ LAGH ++LKR
Sbjct: 256 DSQMQDWLESHYLTEQVEAIKELAGHMTNLKR 287


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 419 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDLKRFITENNG 270
           +EVT N+  L D  +TQ  E        EE+V +    IR +   T  +KR+IT++NG
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -2

Query: 427 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCL 257
           +S  +SLKT+  +++  S  T R+ S  + P R      +P+TSS S P+T+ KT L
Sbjct: 120 TSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKR------SPKTSSKSSPKTSPKTSL 170


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 412 SLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 254
           S KT+  +  ++SL TS + S    P      R +P+TSS + P+T+ KT L+
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISP------RTSPKTSSKTSPKTSLKTSLN 395


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 412 SLKTATSSTMLRSLNTSRRNS*VSKPIRF--VASRVTPRTSSGS*PRTTGKT 263
           S KT+  +  ++SL TS + S    P      +S+ +P+TS  S P+T+ KT
Sbjct: 101 SPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKT 152


>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
          Length = 157

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -2

Query: 427 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKT 263
           +S   S KT+  +  ++SL T+ + S   K  R    + +P+TS  + P+T+ KT
Sbjct: 5   TSPKTSPKTSQKTMRIKSLKTTPKTS--PKTRRKTGRKTSPKTSPKTSPKTSPKT 57


>SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 417 GSH*KQRPPPRC*DHSIHRGGIRESASRYDS*PRGSHLGP 298
           G H  + P      H   R G  ESA RYD   RG+H  P
Sbjct: 15  GDHDAESPETPSDGHGSARPGTTESAGRYD---RGTHPAP 51


>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 341 QADTIRSLAGHTSDLKRFITENNGKDLSLA 252
           Q + I SLAGHTS ++  +  N+G+DL +A
Sbjct: 50  QPNVIMSLAGHTSPVE-CVQFNSGEDLVVA 78


>SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 519

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 299 LKRFITENNGKDLSLAVYLFDEYLQ 225
           LKR++ +N   D+SL + LFD +++
Sbjct: 468 LKRYLGKNFCSDISLTIRLFDSFVK 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,494
Number of Sequences: 59808
Number of extensions: 209586
Number of successful extensions: 356
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)