Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0533
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.022
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.038
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 0.36
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 2.5
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 28 2.5
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 2.5
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 2.5
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 27 5.8
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 419 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 264
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.038
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -1
Query: 389 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.36
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 389 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 291
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 416 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 267
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 416 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 267
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 142 FRYKYGCLIVMYPFLF*AKNMLCNCF 65
F + YG L+ YPF+F +L CF
Sbjct: 15 FFHSYGLLVSGYPFIFLVSPILVTCF 40
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 365 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 246
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 365 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 246
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 312 TREATNRIGLLTHEFLLDVLS 374
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 312 TREATNRIGLLTHEFLLDVLS 374
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 312 TREATNRIGLLTHEFLLDVLS 374
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 312 TREATNRIGLLTHEFLLDVLS 374
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 312 TREATNRIGLLTHEFLLDVLS 374
T ATNR G +H+F LDVLS
Sbjct: 3645 TCTATNRGGKASHDFSLDVLS 3665
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,112,335
Number of Sequences: 27780
Number of extensions: 167700
Number of successful extensions: 327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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