Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0533
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.9  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 312 TREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSD 413
           + E+ N  GL    FL +V+SD   + +   F D
Sbjct: 802 SEESINNQGLECLRFLNEVISDFDAILDQNKFKD 835


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 273 VVLGYEPLEVRGVTREATNRIGLLTHEFL 359
           VV+ YEP+   G  + AT +     HE L
Sbjct: 159 VVVAYEPVWAIGTGKTATPQQAQEVHEKL 187


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = -1

Query: 368 YIEEEFVSQQADTIRSLAGHTSDL 297
           Y++++ ++ +  T  ++AGH  +L
Sbjct: 6   YVDKQLLASRCVTKAAIAGHDGNL 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,016
Number of Sequences: 438
Number of extensions: 1825
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)