Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0532
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.24 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   3.0  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   3.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.0  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -3

Query: 379  YTNFNICKFITFFYNS*FIYWCT-NLILKFILSSMELFYRNLWLRCLLVTNFKN*IKFIK 203
            +T+F I   + FF+   F++    +  L F L+ +E+FY      CLL   F   +  I 
Sbjct: 785  FTDFEINSILNFFFC--FLHTVEPSGKLTFELAFLEIFYE--LFNCLLHLQFSKYLVIIG 840

Query: 202  QLLSDSYCPRVLNPKYIIYFLYEFRY 125
             LLSD Y     + K  +++   + Y
Sbjct: 841  TLLSDKYMTLGFSGKAHLFYTKCYSY 866


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 515 DYLHPDLKLIHLLIDITRMNSFAMTSLTHTIP 610
           DY+H    +   +ID+  +NS A+ S T  +P
Sbjct: 181 DYMHRGRSISSPMIDVEHINSTAVPSKTKNLP 212


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 342 KNVINLQMLKLVYFF*TFRSCLQSLYEGIVNRHN 443
           KN + +  LK + FF T  SC ++L + I + HN
Sbjct: 435 KNDLYINWLKSLSFFQTNSSCAEALVKVIPHYHN 468


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 208 IKQLLSDSYCPRV 170
           ++QL+SD+YCP +
Sbjct: 40  LRQLISDTYCPHI 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,223
Number of Sequences: 5004
Number of extensions: 40873
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)