Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0532
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical ...    31   0.51 
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    29   2.7  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    29   2.7  
U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical
           protein Y45F10B.11 protein.
          Length = 325

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 375 LTLTSVSLLHFFIIHNLFIGAPISF*NSYYLQWNCSIEIYG*D 247
           L+LT++S+L  FI H  F+G  I   N YY  +  ++  YG D
Sbjct: 248 LSLTTLSMLFSFIFH--FVGGLIFIINPYYTAYFIALRPYGND 288


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 403 QLRNV*KKYTNFNICKFITFFYNS*FIYWCTNLILKFILSSMELFYRNLWLRCLLVTNFK 224
           Q+RNV  K +   +C  I  F    F Y C NL+L  I  +  +    L  R + + +F+
Sbjct: 63  QVRNVNNKISMALLCDGICKFIGPWFCYHCYNLLLTMITVTGLINLHTLCYRTMCLKHFE 122


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 403 QLRNV*KKYTNFNICKFITFFYNS*FIYWCTNLILKFILSSMELFYRNLWLRCLLVTNFK 224
           Q+RNV  K +   +C  I  F    F Y C NL+L  I  +  +    L  R + + +F+
Sbjct: 63  QVRNVNNKISMALLCDGICKFIGPWFCYHCYNLLLTMITVTGLINLHTLCYRTMCLKHFE 122


>U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical
           protein C16D9.5 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
 Frame = -3

Query: 385 KKYTNFNICKFITFFYNS*FIYWCTNLILKFILSSMELFYRNL-WLRCLLVTNFKN*IKF 209
           K+++N  +  F T  Y +   +W        IL+ +   Y N+ W+   +       I+ 
Sbjct: 191 KQFSNLEVRVFNTSGYPNYTNHWMEYRFKPLILAEVMKDYENIWWMDAHISVKKPGMIEN 250

Query: 208 IKQLLSDSYCPRVLNPKYIIYFLYEFRYTNFTALSITFYDY 86
           + + +S++    V      IY+     ++NF  L     DY
Sbjct: 251 LFKEISENTKKSVTKVPISIYYFIHSSHSNFATLFTDLLDY 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,775
Number of Sequences: 27780
Number of extensions: 218541
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)