Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0531
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789...    28   5.3  
07_01_0420 + 3212498-3213076                                           27   9.3  
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419...    27   9.3  

>03_06_0762 +
           36078414-36078539,36078700-36078750,36078832-36078981,
           36079055-36079803,36079914-36080013,36080116-36080259,
           36080333-36080452,36080532-36080846
          Length = 584

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 504 SFSYRKKKKLERFENALSERVLRCV 430
           S S  KKKK+ +  N LSER+++C+
Sbjct: 216 SSSSNKKKKMVQQPNKLSERIVKCL 240


>07_01_0420 + 3212498-3213076
          Length = 192

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 68  NWTGSVACKAVLCALSASFLTFSIA*KLTQICMKL 172
           +W+G+ A    LCA++A FL  +    +TQ+C ++
Sbjct: 50  SWSGAAAVIVCLCAVAAVFLIMA---GITQLCKRV 81


>02_01_0570 -
           4195409-4195443,4196245-4196333,4196539-4196630,
           4196726-4196833,4196984-4197118,4197211-4197256,
           4197358-4197458,4198285-4198422,4198503-4198601,
           4198740-4198856,4199195-4199356,4199734-4199793,
           4200371-4200538,4200608-4200718,4201401-4201499,
           4201579-4201644,4202407-4202490,4202563-4202605,
           4202684-4202739,4202817-4202925,4203442-4203524,
           4203842-4203925,4204311-4204382,4204462-4204539,
           4204633-4204716,4204806-4204876,4205943-4206012,
           4206495-4206626,4207168-4207284,4208185-4208367
          Length = 963

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 489 KKKKLERFENALSERVLRCVAFT-RKLQINY 400
           K  + +++   ++E  LRCVAF  R L +NY
Sbjct: 514 KANQFKKYIEEMAEESLRCVAFAYRNLDLNY 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,770
Number of Sequences: 37544
Number of extensions: 240777
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)