Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0530
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KE53 Cluster: Putative uncharacterized protein; n=1; ...    32   4.4  
UniRef50_UPI00004DA174 Cluster: Platelet glycoprotein Ib alpha c...    32   5.8  
UniRef50_Q91ES6 Cluster: ORF129; n=1; Cydia pomonella granulovir...    32   5.8  
UniRef50_A0MF60 Cluster: Putative uncharacterized protein; n=2; ...    31   7.7  
UniRef50_Q96T58 Cluster: Msx2-interacting protein; n=14; Eutheri...    31   7.7  

>UniRef50_Q5KE53 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 179

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 328 IRNLVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAVR*QPL*AAGTQE 161
           +RN + ++  G+    GN+ +    FVRHH  N  +   R + +R Q L  A T E
Sbjct: 4   LRNCMGLAKIGIVDAYGNVLME--SFVRHHPANVVNYVTRKSGIRPQDLVGAPTYE 57


>UniRef50_UPI00004DA174 Cluster: Platelet glycoprotein Ib alpha
           chain precursor (Glycoprotein Ibalpha) (GP-Ib alpha)
           (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains:
           Glycocalicin].; n=1; Xenopus tropicalis|Rep: Platelet
           glycoprotein Ib alpha chain precursor (Glycoprotein
           Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha)
           (CD42B-alpha) (CD42B) [Contains: Glycocalicin]. -
           Xenopus tropicalis
          Length = 613

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 334 NHIRNLVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAV 197
           +HI NL  +++    + S N   S      HHL+N Q L+ +HN +
Sbjct: 107 DHIPNLSLLTNLNKLILSHNRITSVPDAAFHHLKNLQQLYLQHNGI 152


>UniRef50_Q91ES6 Cluster: ORF129; n=1; Cydia pomonella
           granulovirus|Rep: ORF129 - Cydia pomonella granulosis
           virus (CpGV) (Cydia pomonellagranulovirus)
          Length = 128

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 IFVRNSTRSKMNKFTLVLGFLLLIAVVN 195
           +FV N+ R K NK+  VL FLL   +VN
Sbjct: 100 LFVNNACREKYNKYLFVLVFLLCAQIVN 127


>UniRef50_A0MF60 Cluster: Putative uncharacterized protein; n=2;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 372

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 250 QSDFKKERDYPTLNRHRRRRWQLNYG------YDYQPPRHYTERRDYYQNQQDLIP 399
           +SD +++ DYP+   HR R  + ++        DY  P  Y  RRD  ++  DL P
Sbjct: 278 RSDHREKSDYPSAYSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGFDLHP 333


>UniRef50_Q96T58 Cluster: Msx2-interacting protein; n=14;
           Eutheria|Rep: Msx2-interacting protein - Homo sapiens
           (Human)
          Length = 3664

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 271 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 411
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,283,323
Number of Sequences: 1657284
Number of extensions: 6127421
Number of successful extensions: 12964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12942
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)