Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0530
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229...    27   4.9  
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116...    27   6.4  

>04_03_0869 +
           20421368-20421548,20421781-20422664,20422747-20422905,
           20423008-20423252,20423360-20423453,20423580-20423768
          Length = 583

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 313 QLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 402
           +L  GY +QPP+H+     YY+    L  Q
Sbjct: 45  KLRTGYHFQPPKHWINGPMYYKGLYHLFYQ 74


>10_08_0114 -
           14911119-14911301,14911458-14911550,14911634-14911678,
           14911831-14911953,14912090-14912177,14912976-14913118
          Length = 224

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 299 VGGDGN*ITDMIINPPDIIPKEETIIKT 382
           VGGDG    D++ +P  I+P  + I+ T
Sbjct: 26  VGGDGAEPVDLVEHPSGIVPTLQNIVST 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,985
Number of Sequences: 37544
Number of extensions: 171502
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)