Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0530
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi...    31   0.25 
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    29   1.0  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    29   1.0  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    28   3.1  
At5g58890.1 68418.m07378 MADS-box family protein various predict...    26   9.4  
At1g25570.1 68414.m03174 leucine-rich repeat protein-related  co...    26   9.4  

>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 371

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 250 QSDFKKERDYPTLNRHRRRRWQLNYG------YDYQPPRHYTERRDYYQNQQDLIP 399
           +SD +++ DYP+   HR R  + ++        DY  P  Y  RRD  ++  DL P
Sbjct: 278 RSDHREKSDYPSAYSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGFDLHP 333


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 310 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 402
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 310 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 402
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 351 LYRKKRLLSKPTGSDPSDI 407
           +YR++RL SKPT S P D+
Sbjct: 11  VYRRRRLQSKPTSSFPLDL 29


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 323 TDMIINPPDIIPKEETIIK 379
           TD++I+ P+I PK+ET ++
Sbjct: 54  TDVVISEPEIWPKDETKVR 72


>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to light
           repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376
          Length = 628

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 310 WQLNYGYDYQPPRHYTE---RRDYYQNQQDLI 396
           W+  + YD+ PP   T    +R+ YQ Q+ L+
Sbjct: 577 WRGRHDYDFAPPHDLTSLAAKRNRYQRQKSLM 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,698,229
Number of Sequences: 28952
Number of extensions: 137011
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)