Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0528
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               28   5.0  
SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)                   27   8.8  
SB_24352| Best HMM Match : PaREP8 (HMM E-Value=4.1)                    27   8.8  
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)                       27   8.8  

>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 226 HTFIVLRPTLGTVSCLGA*RVNISLGAQEEFNQVSKI 336
           HTF+   P+L T SC+ A R+ ++L      N++SK+
Sbjct: 209 HTFLSFSPSLITSSCIAASRICLNL-IPSWTNELSKV 244


>SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)
          Length = 144

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 376 VHRPDAQRNVPEGKKSK*TLRYTYI*HTYYVAFR 477
           VHR     N P  K+ +   RYTY+     V FR
Sbjct: 103 VHRRSVYLNCPNAKQKRKRHRYTYVKRCRCVTFR 136


>SB_24352| Best HMM Match : PaREP8 (HMM E-Value=4.1)
          Length = 176

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 130 LYLLRRLKHCSFKFDSF-FTKTESHRTLVLKDLHTF 234
           L+L + +K  + K +   F+K   HRT+ L +LH F
Sbjct: 54  LHLEKYMKRTASKLEQTPFSKANEHRTIELVNLHAF 89


>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
          Length = 909

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -3

Query: 227 CKSFKTRVRCDSV--FVKKESNLNEQCLRRLSKYRM*KVQEFLRIESATRALRESTENIV 54
           C S  +R+  +S+     K+SN+ E    +LSK ++ K+   LR    +     S E+ +
Sbjct: 175 CPSTTSRLTDNSLDAHTSKDSNITEHAPVKLSKNQLRKLDSSLRNRLLSYLQTNSGEHAL 234

Query: 53  Q-YF*SRCTLKSTLVPNS 3
           +     +C LK   V NS
Sbjct: 235 RDIVNQKCILKGVQVMNS 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,084
Number of Sequences: 59808
Number of extensions: 238546
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)