Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0528
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    30   0.83 
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    27   5.8  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    27   7.7  

>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 127 ILYLLRRLKHCSFKFDSFFTKTESHRTLVL 216
           I YL+R    CS  F  +F +T+S R LVL
Sbjct: 266 ITYLVRLFAFCSLNFFVYFVETKSTRNLVL 295


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 451 IYRYIVMFIWIFFLLE 404
           + +YI+ FIWIF+LL+
Sbjct: 157 VQKYILKFIWIFYLLK 172


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  SKILHNIFCTLSESTCCAFNSEKLLNF 122
           +KI  N+FC LS ST C  +  +L  F
Sbjct: 588 TKIASNVFCCLSSSTTCESSISELKLF 614


>Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical
           protein C53D6.4 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/76 (18%), Positives = 32/76 (42%)
 Frame = -3

Query: 236 MNVCKSFKTRVRCDSVFVKKESNLNEQCLRRLSKYRM*KVQEFLRIESATRALRESTENI 57
           ++ C +F   + CD     + +    +C    +K ++  V EF+++     + R   + +
Sbjct: 59  LDTCPTFYDSI-CDDPLFNQYNEFEFRCRYPRNKIQVGGVDEFIKLFGINESTRYIRKRL 117

Query: 56  VQYF*SRCTLKSTLVP 9
           V +    C   + L P
Sbjct: 118 VMFHSPSCPFSARLAP 133


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 451 IYRYIVMFIWIFFLL 407
           + +YI+ FIWIF+LL
Sbjct: 157 VQKYILKFIWIFYLL 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,540
Number of Sequences: 27780
Number of extensions: 197120
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)