Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0528
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    31   0.33 
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    29   1.8  
At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM...    27   5.4  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    27   5.4  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   9.5  
At3g55070.1 68416.m06116 expressed protein                             27   9.5  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 275 PKQLTVPRVGLSTMNVCKSFKTRVRCDSVFVKKESNLNEQCLRR 144
           P Q T+P +      +C SF  +++   +   KE N   QC+RR
Sbjct: 617 PVQTTLPPLSRRPSRLCASFDDQIKDLEIEASKEQNEINQCMRR 660


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 148 DVLVNTECKKFKSFSELKAQHVLSERVQKILCNIFDHAVH 29
           D    + C KF++  E+K Q V+    Q I C   DH ++
Sbjct: 761 DFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTLY 800


>At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM
           domain-containing protein contains Pfam profiles
           PF00258: Flavodoxin, PF04055: radical SAM domain protein
          Length = 647

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 73  SRRARVALSILRNS*TFYILYLLRRLKH 156
           S R R+A   L ++ TFY ++  RRLKH
Sbjct: 6   SVRVRLAFVALLSATTFYCIHKYRRLKH 33


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 433 MFIWIFFLLERFFAHLV 383
           MFIW+FF + +FF HLV
Sbjct: 888 MFIWLFF-IHQFFNHLV 903


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 142 LVNTECK-KFKSFSELKAQHVLSERVQKILCNIFDHAVH*NQPSCRI 5
           LV   C  +FKS  +    H + E     L NIF++ VH   PS  +
Sbjct: 185 LVEKRCAFRFKSDEDRAPIHRVVEETFPHLLNIFNNLVHVENPSLEV 231


>At3g55070.1 68416.m06116 expressed protein
          Length = 418

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 133 TECKKFKSFSELKAQHVLSERVQKILCNIF 44
           TEC K+K   EL+   VL ++ ++  C ++
Sbjct: 272 TECSKYKVLFELRQWDVLVDQFKQEFCKLY 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,449,521
Number of Sequences: 28952
Number of extensions: 164971
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)