Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0527
         (453 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6PF65 Cluster: Putative uncharacterized protein precur...    33   2.9  
UniRef50_O96204 Cluster: Putative uncharacterized protein PFB055...    32   6.6  

>UniRef50_A6PF65 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella sediminis HAW-EB3|Rep:
           Putative uncharacterized protein precursor - Shewanella
           sediminis HAW-EB3
          Length = 242

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 25  IIYLDTKPYLFYPSFNPITGIYAIVKQLC 111
           ++YL  K  LFY S+N +TGI   +  LC
Sbjct: 138 LVYLSMKGRLFYSSWNAVTGILTFISFLC 166


>UniRef50_O96204 Cluster: Putative uncharacterized protein PFB0555c;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PFB0555c - Plasmodium falciparum (isolate 3D7)
          Length = 4091

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 208  YSHFAVMYFNIIHNRPMFLQLFF*IIVIHSHGYK 107
            Y   ++ Y N ++N P+FL LF   + IH H +K
Sbjct: 3066 YLKKSIKYNNHLYNMPIFLSLFLRCVTIHLHYFK 3099


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,547,416
Number of Sequences: 1657284
Number of extensions: 7367506
Number of successful extensions: 13873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13872
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)