Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0527
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical ...    28   3.7  
AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical ...    28   3.7  
AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical...    27   6.4  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    27   6.4  
U41272-2|AAA82447.1|  143|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical
           protein T10B11.7b protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +2

Query: 314 SLSFIEKTLHHNYLVRISRSYIHVP*HFCF------SEINMSIHYF 433
           SL  I++  HH + V  S SY  V  HFC        E+N S++ F
Sbjct: 125 SLLPIQRPSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQSVNEF 170


>AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical
           protein T10B11.7a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +2

Query: 314 SLSFIEKTLHHNYLVRISRSYIHVP*HFCF------SEINMSIHYF 433
           SL  I++  HH + V  S SY  V  HFC        E+N S++ F
Sbjct: 162 SLLPIQRPSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQSVNEF 207


>AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical
           protein F20H11.5 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 LAGENILCDSKAESKCSNESRFFKILIIYRENASPQLFG 357
           L   +IL DSK +     ES +  ++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


>AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 LAGENILCDSKAESKCSNESRFFKILIIYRENASPQLFG 357
           L   +IL DSK +     ES +  ++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


>AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical
           protein Y51H4A.16 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 IMLKYITAKWLYRHSYS*NVLVFSG 248
           I+L YI  + +Y+HS   NVL+F G
Sbjct: 109 ILLYYILIRVIYKHSNLENVLMFHG 133


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 368 VKYEPNNCGEAFSR*MIRILKKRDSLLHFDS 276
           +K+ P +C  A     + ILKK +SLL  +S
Sbjct: 544 IKHSPKDCYSAVRNTTVVILKKLESLLQMES 574


>U41272-2|AAA82447.1|  143|Caenorhabditis elegans Hypothetical
           protein T03G11.5 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 289 SNESRFFKILIIYRENASPQLFGSYFTFIYTCSLTLLF**NQYVYSLFHK 438
           +  S F  I +      S  L  SY     +CSL + F    ++Y LF++
Sbjct: 94  ATSSTFNNITLPENSKESQLLVNSYPHVFQSCSLIIFFVTKMFIYKLFYQ 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,981
Number of Sequences: 27780
Number of extensions: 193851
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)