Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0523
         (493 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4VU88 Cluster: Copper-induced girdle band-associated c...    35   1.1  
UniRef50_A4Q7K5 Cluster: Immunoglobulin/major histocompatibility...    35   1.1  
UniRef50_UPI0000E81C9F Cluster: PREDICTED: hypothetical protein;...    32   6.0  
UniRef50_Q5K896 Cluster: ABC transporter, putative; n=1; Filobas...    32   8.0  

>UniRef50_Q4VU88 Cluster: Copper-induced girdle band-associated cell
           surface protein precursor; n=2; Thalassiosira
           pseudonana|Rep: Copper-induced girdle band-associated
           cell surface protein precursor - Thalassiosira
           pseudonana (Marine diatom)
          Length = 918

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 250 KKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPDFNICSEN 390
           K+ +F+E L+ +  T  NE+     +DQD+L FL+   PD++   +N
Sbjct: 300 KQQDFDEELLPNVATLINEVF----LDQDFLAFLQTEYPDYDFIQDN 342


>UniRef50_A4Q7K5 Cluster: Immunoglobulin/major histocompatibility
           complex; Tetratricopeptide- like helical; n=2; core
           eudicotyledons|Rep: Immunoglobulin/major
           histocompatibility complex; Tetratricopeptide- like
           helical - Medicago truncatula (Barrel medic)
          Length = 857

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 485 GDSCCSKSNSA*SLEIPLSEQVLLIALEVSDTFSEHMLKSGIDSS 351
           GD C    +    L + L+ Q LL AL + D++S + LKSG+ S+
Sbjct: 539 GDDCVPGEDGRLKLSMSLARQCLLNALHLLDSYSTNRLKSGLPSN 583


>UniRef50_UPI0000E81C9F Cluster: PREDICTED: hypothetical protein;
           n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 266

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 370 NLELTPRENPNSPGPWRRS 314
           ++ L+PR  P++PGPW+RS
Sbjct: 122 SVSLSPRRGPDAPGPWKRS 140


>UniRef50_Q5K896 Cluster: ABC transporter, putative; n=1;
           Filobasidiella neoformans|Rep: ABC transporter, putative
           - Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 1463

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -2

Query: 111 FTYITYFIIALQ*--GKYFIVSIFIYY-YLCTTSL 16
           FT I YF+  L+   G YFI  +FIY+  LCTT+L
Sbjct: 598 FTLIIYFMTGLKVDAGLYFIYLLFIYFTTLCTTAL 632


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,421,692
Number of Sequences: 1657284
Number of extensions: 8460940
Number of successful extensions: 19153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19135
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)