Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0523
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_44428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1) 28 3.6
SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12) 28 3.6
SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) 27 8.4
>SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 247 VKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEES 360
+++ E+ L + W A +E ME + YLD+L++S
Sbjct: 66 IEQQMLEDKLRATDWEATDEAMEEAVARESYLDWLQDS 103
>SB_44428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 247 VKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEES 360
+++ E+ L + W A +E ME + YLD+L++S
Sbjct: 66 IEQQMLEDKLRATDWEATDEAMEEAVARESYLDWLQDS 103
>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
Length = 271
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 247 VKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEES 360
+++ E+ L + W A +E ME + YLD+L++S
Sbjct: 206 IEQQMLEDKLRATDWEATDEAMEEAVARESYLDWLQDS 243
>SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)
Length = 224
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 305 NSWRSSPWTRTIWIFSRSQFQISTYALKMYQKPLKL*VAPVQTVEFPVIMLNSILNSNC 481
++WRS P T T W + ++ +L KP K P + V +P++ I ++ C
Sbjct: 89 STWRSKPVTVTAWSYMFGAMFMALASLYYVNKPEKFHHIPREEV-YPIVYAIFIASALC 146
>SB_23576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 247 VKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEES 360
+++ E+ L + W A +E ME + YLD+L++S
Sbjct: 144 IEQQMLEDKLRATDWEATDEAMEEAVARESYLDWLQDS 181
>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
Length = 1001
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 364 ELTPRENPNSPGPWRRSP 311
E+ PRENP SP W P
Sbjct: 976 EVEPRENPKSPDEWLFGP 993
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,123
Number of Sequences: 59808
Number of extensions: 260108
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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