Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0523
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.58 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.58 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   0.76 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   0.76 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   0.76 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   3.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 268 EGLMSDTWTAPNELMEIFSMDQ 333
           +G  S++W A NEL + F ++Q
Sbjct: 304 QGFPSNSWVAINELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 268 EGLMSDTWTAPNELMEIFSMDQ 333
           +G  S++W A NEL + F ++Q
Sbjct: 272 QGFPSNSWVAINELQDSFWLEQ 293


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 58  NKIFASLKCNYKICYISEEVLYCLQYYDLY 147
           +KI +SL  NY     + + LYC  Y  LY
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 58  NKIFASLKCNYKICYISEEVLYCLQYYDLY 147
           +KI +SL  NY     + + LYC  Y  LY
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLY 108


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 58  NKIFASLKCNYKICYISEEVLYCLQYYDLY 147
           +KI +SL  NY     + + LYC  Y  LY
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYRKLY 108


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 328 DQDYLDFLEESIPDFNICSENVSETSK 408
           D++ L F+E ++  FN+  EN +   K
Sbjct: 56  DENVLLFIECTMKKFNVVDENANFNEK 82


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 82  CNYKICYISEEVLYCLQYYDLY 147
           C   I Y+S+   Y L  YD +
Sbjct: 320 CGSAIAYVSDVFRYGLLIYDFF 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,967
Number of Sequences: 438
Number of extensions: 2600
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)