Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0523
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    29   1.7  
At1g03180.1 68414.m00295 hypothetical protein                          27   5.2  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    27   6.9  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    27   9.1  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 250 KKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPD 369
           +K  F +     TW  P ELM +F       D+ E S PD
Sbjct: 218 RKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257


>At1g03180.1 68414.m00295 hypothetical protein
          Length = 275

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 293 RRQMNSWRSSPWTRTIWIFSRSQFQISTYALKMY 394
           R Q N+  S P    IW FS SQF  S+Y L  +
Sbjct: 229 RTQDNATNSPPTNDLIWYFSYSQF--SSYTLNKF 260


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 241 KSVKKMEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEES 360
           K+V+ +E  EG + D +   NEL+E   M    +  LEES
Sbjct: 163 KAVEILEAYEGTLEDDYPPENELIEHTEMILYKVSLLEES 202


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 256 MEFEEGLMSDTWTAPNELMEIFSMDQDYL 342
           +E ++   S  WT+P E  +IFS+ + Y+
Sbjct: 614 VETQQAATSPDWTSPFEGKDIFSLSRQYV 642


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,061
Number of Sequences: 28952
Number of extensions: 188193
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)