Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0521
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    27   2.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   4.7  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.7  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   8.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   8.2  

>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 INPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQPVP 434
           +NP+YK    + ++++ +   + ET K +  L   VP
Sbjct: 18  LNPVYKGAEHLCRKNIHNQVYNVETGKTIQILQDLVP 54


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 255  AAYRKMLALALYYKAILSLSSES--INPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQP 428
            A YR +  +   +++I+  + E+  I+P+  S  E +  ++ + T  F   + V+P+ Q 
Sbjct: 1128 ADYRGINEILNCWESIIKTTHENAIISPVGSSPVEAVSSTLKNLTLRFSQSENVFPIEQI 1187

Query: 429  VPKLE-VLVQCSGEAV 473
            +   E       GEAV
Sbjct: 1188 IDITERYAFDQQGEAV 1203


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 336 ILDLLIQSLNLRLPCNTKPMLTFFYTPQTAQGAF 235
           + D+L    N R   N   +L F +TP+T   AF
Sbjct: 109 LFDILSARTNKRGQINLNHLLNFQFTPRTNSNAF 142


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 232 LGFNSSFKDFNAICNVLSVKGFWLISNASVFEAWMKSGEIP 110
           +G N   K F    N L+     L SNA V E   K G+IP
Sbjct: 18  IGMNPQTKTFEGAINRLNS----LQSNAKVLEVLRKRGKIP 54


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 181 SVKGFWLISNASVFEAWMKSGEIP 110
           +V+G W  +  S+ E+W+K G  P
Sbjct: 427 AVEGKWSNNGRSITESWLKEGLRP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,861
Number of Sequences: 5004
Number of extensions: 38318
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)