Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0521
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   1e-17
SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.)                 52   3e-07
SB_30599| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=7.7e-35)          52   3e-07
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            49   2e-06
SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  

>SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 47/147 (31%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
 Frame = +3

Query: 66  KQSKNVLQNVSIVYGGISPDFIHASKTEALLINQNPFTDKTLQMALKSLNXXXXXXXXXX 245
           +++  +     IV+GGI  +F+HA+KTE  L+N+      TL+ AL+ L+          
Sbjct: 5   RKTMMITSKPKIVFGGIRLNFLHATKTEEFLLNKRLTNPNTLKGALEILDEEIVPDPEFI 64

Query: 246 XXSAA---YRKMLALALYYKA-ILSLSSESINPIYKSGGEVI-KRSVSHGTQSFETDKEV 410
             + +   Y K L  +L+YK  + +L S++ + +  + G+++ +R+VS G QSF+T    
Sbjct: 65  AHNGSTVEYHKNLTKSLFYKFYVAALGSDASSRVRSAAGKILHERAVSSGRQSFDTKPAR 124

Query: 411 WPLNQPVPKLEVLVQCSGEAVFANDLP 491
           +P+++P+PKL   +Q SGEA + +D+P
Sbjct: 125 YPVSKPIPKLASKLQASGEAQYTDDIP 151


>SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)
 Frame = +3

Query: 291 YKAILSLSSESINPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQPVPKLEVLVQCSGEA 470
           Y   L++  +  +   +S      R++S GTQ++++  E++PL +P+ KL   +Q SGEA
Sbjct: 197 YAFYLAMLGDKASARLRSAAVPYTRAISSGTQNYDSHPELYPLTKPMTKLSAKLQASGEA 256

Query: 471 VFANDLP 491
            + ND+P
Sbjct: 257 QYTNDIP 263



 Score = 33.9 bits (74), Expect = 0.073
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  GCRQNAHAVVNAGFLFHFKQSKNVLQNVSIVYGGISP 122
           G   NAHA VNAGF     ++     +  +VYGG+ P
Sbjct: 160 GWESNAHAYVNAGFATTLDKASLTGSSFRLVYGGVGP 196


>SB_30599| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=7.7e-35)
          Length = 255

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/67 (32%), Positives = 40/67 (59%)
 Frame = +3

Query: 291 YKAILSLSSESINPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQPVPKLEVLVQCSGEA 470
           Y   L++  +  +   +S      R++S GTQ++++  E++PL +P+ KL   +Q SGEA
Sbjct: 34  YAFYLAMLGDKASARLRSAAVPYTRAISSGTQNYDSHPELYPLTKPMTKLSAKLQASGEA 93

Query: 471 VFANDLP 491
            + ND+P
Sbjct: 94  QYTNDIP 100



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 24  NAHAVVNAGFLFHFKQSKNVLQNVSIVYGGISP 122
           NAHA VNAGF     ++     +  +VYGG+ P
Sbjct: 1   NAHAYVNAGFATTLDKASLTGSSFRLVYGGVGP 33


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +3

Query: 21  QNAHAVVNAGFLFHFKQSK-NVLQNVSIVYGGISPDFIHASKTEALLINQNPFTDKTLQM 197
           QNAHA VN         S   V     IV+GGI  +F+HA+KTE  L N+     +TL++
Sbjct: 685 QNAHAYVNGSMSMAVDHSTMTVSTKPRIVFGGIRHNFLHATKTEEFLQNKVLTDAETLKV 744

Query: 198 ALKSLNXXXXXXXXXXXXSAA---YRKMLALALYYKA 299
           AL+ L+            + +   Y K L  +L+YKA
Sbjct: 745 ALEILDSEIVPDPEFIAHNGSTVEYHKNLTQSLFYKA 781


>SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 303 LSLSSESINPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQPVPKLEVLVQCSG 464
           +  S   ++ I K+  + +    S GT+SF T    +PL    P L+  ++C+G
Sbjct: 83  IGFSEAQLSVIRKTVSDALAIVASEGTESFSTPGSAFPLGLDRP-LDEALECTG 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,906
Number of Sequences: 59808
Number of extensions: 271009
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)