Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0521
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   1.8  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   1.8  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    28   3.2  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    28   4.2  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    28   4.2  
AL033510-9|CAL49451.1|  291|Caenorhabditis elegans Hypothetical ...    28   4.2  
AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    28   4.2  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    28   4.2  
U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    27   5.6  
U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defecti...    27   9.8  
U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defecti...    27   9.8  
U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defecti...    27   9.8  
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    27   9.8  

>Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical
           protein K02B9.3a protein.
          Length = 287

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 417 VATLLYLFQKIECRVKHFVL*LPRHFCILDLLIQSLN 307
           +ATLLYL   I+C    +V  L R+F +++ LI ++N
Sbjct: 20  IATLLYLMVAIKCNGIFYVPHLVRYFFLINTLIITIN 56


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 6    PPGCRQNAHAVVNAGFLFHFKQSKNVLQNVSIVYGGISP 122
            P     +AH VV+  F  HF Q   V+  +SIV   +SP
Sbjct: 3947 PDRLMASAHRVVSTAFDDHFMQQDKVVDILSIVDNEVSP 3985


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 6    PPGCRQNAHAVVNAGFLFHFKQSKNVLQNVSIVYGGISP 122
            P     +AH VV+  F  HF Q   V+  +SIV   +SP
Sbjct: 3947 PDRLMASAHRVVSTAFDDHFMQQDKVVDILSIVDNEVSP 3985


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 425 LIQWPHFFICFKRLSAV*NTSFYNFPATFVYWI 327
           LI   H+++ + RL    N +FYN   T  Y++
Sbjct: 266 LINGKHYYLPYHRLKQAWNANFYNVKTTDKYYV 298


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 250 GSGGISLG---FNSSFKDFNAICNVLSVKGFWLISNASVFEAWMKSGEI 113
           G G  S G   F ++ +DF A C+ +      L+  A ++  W+  G I
Sbjct: 441 GLGMFSTGRIKFGTNLRDFFANCSFIVTSSDDLVCGAEIYSHWLNRGNI 489


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 250 GSGGISLG---FNSSFKDFNAICNVLSVKGFWLISNASVFEAWMKSGEI 113
           G G  S G   F ++ +DF A C+ +      L+  A ++  W+  G I
Sbjct: 441 GLGMFSTGRIKFGTNLRDFFANCSFIVTSSDDLVCGAEIYSHWLNRGNI 489


>AL033510-9|CAL49451.1|  291|Caenorhabditis elegans Hypothetical
           protein Y40H7A.4b protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 LSVSKD*VPCETLR-FITSPPLLYIGFIDSELKLKIAL*YKANANIFLYAADGSGGISLG 227
           L+  KD     TLR F T    +Y+G I   L +   +  +    + +   D  GG   G
Sbjct: 152 LAADKDPQNMNTLRIFSTLKSHVYVGMIPDNLTIAHIMHSEYKTEVEILKIDIEGGEHTG 211

Query: 226 FNSSFKDFNAICNVL 182
                +DF  +C +L
Sbjct: 212 LEQFLRDF-FVCQIL 225


>AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical
           protein Y40H7A.4a protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 LSVSKD*VPCETLR-FITSPPLLYIGFIDSELKLKIAL*YKANANIFLYAADGSGGISLG 227
           L+  KD     TLR F T    +Y+G I   L +   +  +    + +   D  GG   G
Sbjct: 152 LAADKDPQNMNTLRIFSTLKSHVYVGMIPDNLTIAHIMHSEYKTEVEILKIDIEGGEHTG 211

Query: 226 FNSSFKDFNAICNVL 182
                +DF  +C +L
Sbjct: 212 LEQFLRDF-FVCQIL 225


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 250 GSGGISLG---FNSSFKDFNAICNVLSVKGFWLISNASVFEAWMKSGEI 113
           G G  S G   F ++ +DF A C+ +      L+  A ++  W+  G I
Sbjct: 441 GLGMFSTGRIKFGTNLRDFFANCSFIVTSSDDLVCGAEIYSHWLNRGNI 489


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 250 GSGGISLG---FNSSFKDFNAICNVLSVKGFWLISNASVFEAWMKSGEI 113
           G G  S G   F ++ +DF A C+ +      L+  A ++  W+  G I
Sbjct: 369 GLGMFSTGRIKFGTNLRDFFANCSFIVTSSDDLVCGAEIYSHWLNRGNI 417


>U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical
           protein C53B7.7 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 482 ICKHRFTTALY*YFQFRYRLIQWPHFF 402
           IC H F   L+ Y+ ++YR I +  F+
Sbjct: 91  ICCHFFCKLLFIYYDYQYRFINYVTFY 117


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 360 KRSVSHGTQSFETDKEVWPLNQPVPKLEV 446
           +R   H  Q  E+++ +WP N+P PKLE+
Sbjct: 383 QRKKLHDNQ-LESER-LWPKNEPTPKLEI 409


>U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform a protein.
          Length = 736

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 69  QSKNVLQNVSIVYGGISPDFIHASKTEALLINQNPFTDK-TLQMALKS 209
           + +N L+N  I    ++P  +H S  EA  ++  PF++K TL + +++
Sbjct: 465 EERNRLENQLIFKEAVTPRSLHESMFEAGNLSFEPFSEKNTLPLEIEN 512


>U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform c protein.
          Length = 761

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 69  QSKNVLQNVSIVYGGISPDFIHASKTEALLINQNPFTDK-TLQMALKS 209
           + +N L+N  I    ++P  +H S  EA  ++  PF++K TL + +++
Sbjct: 465 EERNRLENQLIFKEAVTPRSLHESMFEAGNLSFEPFSEKNTLPLEIEN 512


>U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform b protein.
          Length = 777

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 69  QSKNVLQNVSIVYGGISPDFIHASKTEALLINQNPFTDK-TLQMALKS 209
           + +N L+N  I    ++P  +H S  EA  ++  PF++K TL + +++
Sbjct: 465 EERNRLENQLIFKEAVTPRSLHESMFEAGNLSFEPFSEKNTLPLEIEN 512


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 456 IVLVLPI*VPADSVATLLYLFQKIECRVKHFV 361
           ++ V+P  VP  ++A +  LFQ I C  KHF+
Sbjct: 151 LLSVIPFLVPDQNIA-VKKLFQNIPCLPKHFL 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,033,850
Number of Sequences: 27780
Number of extensions: 211039
Number of successful extensions: 440
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)