Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0519
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 92 3e-19
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 87 8e-18
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 86 2e-17
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 86 2e-17
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 2e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 2e-08
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 136 bits (329), Expect = 1e-32
Identities = 63/91 (69%), Positives = 70/91 (76%)
Frame = +1
Query: 187 KHVIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 366
K V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F
Sbjct: 14 KPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMF 73
Query: 367 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 459
+V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 74 DIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 91.9 bits (218), Expect = 3e-19
Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 KQKHVIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEA 357
K K I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E
Sbjct: 57 KSKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEE 116
Query: 358 VEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 447
V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 117 VLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 87.0 bits (206), Expect = 8e-18
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 KQKHVIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEA 357
K K V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K +R++ D E
Sbjct: 55 KAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEE 114
Query: 358 VEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 447
V F +V G+ G EAA VTGP G V GS Y
Sbjct: 115 VLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Frame = +1
Query: 187 KHVIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGE 354
K VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E
Sbjct: 82 KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDE 141
Query: 355 AVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 450
V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 142 PVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Frame = +1
Query: 187 KHVIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGE 354
K VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E
Sbjct: 82 KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDE 141
Query: 355 AVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 450
V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 142 PVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 214 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 387
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 388 GFEAAGVTGP-GGEPVKGS 441
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 214 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 387
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 388 GFEAAGVTGP-GGEPVKGS 441
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 214 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 387
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 388 GFEAAGVTGP-GGEPVKGS 441
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 2e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 214 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 387
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 388 GFEAAGVTGP-GGEPVKGS 441
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,122
Number of Sequences: 27780
Number of extensions: 192006
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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