Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0518
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    42   7e-05
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    29   0.40 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.40 
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    27   2.8  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    26   3.7  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   3.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   5.0  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   5.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.7  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 347 CWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWVDEKQRGNITRKVLCLQCKAEY 523
           C VC    A D  +    PCKC G+ ++VHQ CL  W+        ++K  C  CKA++
Sbjct: 8   CRVCRCEGAPD--SPLFHPCKCTGSIRYVHQECLVEWLGH------SKKTHCELCKAKF 58


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 181 PEIGYAPFFKKKTAKILLLWWNGVEH 258
           P+ G+ P+FK      +  WW  V+H
Sbjct: 190 PQYGFTPWFKLICEHFMFKWWQDVDH 215


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 335 NAKSCWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWV 460
           +A SC +C  T  +  +   +Q CK      + HQ+C+ +W+
Sbjct: 762 SADSCLICLETYTNGDICRKLQACK-----HFFHQACIDQWL 798


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 101 LLNCDNKKDISEYYKNKSTTFHYIRRCLRLATHLSLKR 214
           LL+ D KK++ + YK + T    I+    +A +L LKR
Sbjct: 150 LLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKR 187


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 132 EISFLLSQFNSCFAKASEIENHFDFIK*VGRYIPIALVPNSCSP 1
           E + L  ++N+ F +A   E + DF     RY+ +  V   C P
Sbjct: 285 EAARLRVEYNNNFIRAKSEEEYIDFKALAKRYLAVPFVLLFCEP 328


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 390 RGYNRVNVSEQQNGFISHVS 449
           +GY  VN+SE QNG  ++++
Sbjct: 61  QGYQAVNISESQNGVTAYLA 80


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -3

Query: 420 VPIHLHGCTHAASLSSASVAKQTQ-QDLAFS---SSAGCKACELLTLVP*HSLDSPDIMF 253
           V +  + C     +S   + K T+  D+  +    S  C     L +VP     SPD MF
Sbjct: 570 VLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMF 629

Query: 252 Y 250
           Y
Sbjct: 630 Y 630


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +2

Query: 293 SVSSSQALQPAEDENAKSCWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWVDEKQ 472
           SVS ++  + +       C VC   E+DD+ +      +C   + W H +C+  + DE +
Sbjct: 33  SVSDNEENETSSTGEVTRC-VCGIVESDDEASDGGLYIQCDQCSVWQHGNCV-GFADESE 90

Query: 473 RGNITRKVLCLQCKAEYIVVF 535
              +     C  C  E+  V+
Sbjct: 91  ---VPEVYYCEICHPEFHKVY 108


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 476 GNITRKVLCLQCKAEYIVVFPSM 544
           G++   V CL CK E + V P M
Sbjct: 267 GSLKNVVTCLDCKKERVAVDPLM 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,194
Number of Sequences: 5004
Number of extensions: 57180
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)