Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0516
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   4.5  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   4.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.8  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 176 YKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFTSLVI 54
           Y  Y+K  F F W K      + I     V L+ LF + V+
Sbjct: 213 YHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKLVGLFITAVV 253


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 KTVNSHLARLYNPSKEPALIFYRHGVALLYS 470
           +T +  + +  N ++ P L+  RHGVA  YS
Sbjct: 270 RTDDEKVIKTLNVTRLPHLVAIRHGVAFSYS 300


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 81  QTYFYKNTYKNIKAHKLLLPFEIKMNFV-IPFVSLLLWCNNV 203
           ++YF K+ +  +KA+ +L P     NF  +P V  +++ N V
Sbjct: 161 KSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAV 202


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 288  KQNCETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKE 425
            K+NCE  +K +Q +E+  ++  K  +    + VNS    + N  KE
Sbjct: 1358 KKNCEALEKEKQELETKLQETAKETDTFK-QQVNSLNEEVENLKKE 1402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,136
Number of Sequences: 5004
Number of extensions: 27455
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)