Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0516
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   2.0  
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  29   2.6  
SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)                 28   4.6  
SB_45453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     27   8.0  

>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 297 CETCKKLEQHVESLQEDFKKH----LNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALL 464
           C  CK+L    E   ++ +KH      A+   T+ S LA+ Y     P L  +R G A  
Sbjct: 205 CGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATE 264

Query: 465 YSGE 476
           Y G+
Sbjct: 265 YKGQ 268


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -2

Query: 182 KGYKRYYKIHFNFKW*KQFM--CFNIFISI--FVEVSLLTLFTSLVI*KNHLSLNTGLKL 15
           + Y  Y+ IH NF+W K+F+   F I +++  F    ++ +  S+V+  N  + N  LKL
Sbjct: 493 RSYPLYHSIHDNFEWMKRFVDPQFQIHLAVGKFTSRMVMKMANSIVLPFN--ATNFALKL 550


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 309 KKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRH 449
           K+L+    SL++  K+     S+ T  SH + L NPSK+  L F ++
Sbjct: 139 KRLKHSPLSLEKPRKQAAFRASINTNTSHGSSLTNPSKKSKLSFQKN 185


>SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)
          Length = 308

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 406 FTILQKNQHLYFIDMVLHF 462
           F ILQ+NQ   FID ++HF
Sbjct: 158 FDILQRNQSASFIDGIIHF 176


>SB_45453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 266 FFFSYKFQKFIITYIEQTLRSYIITPK*KGYKRYYK 159
           FF   KFQK  +  I+Q  R     P  KGYK   K
Sbjct: 32  FFSECKFQKVTLGKIKQYTRKKSQVPATKGYKALLK 67


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 279 LFTKQNCETCKKLEQHVESL---QEDFKKHLNAMSVKTVNSHLARLYNPSKE 425
           L+ K+  ET   +   VE     + D  KH  + S+ T+N  +A+   PSKE
Sbjct: 436 LYNKEGDETPVTMFNLVEMWLTDESDDAKHKYSFSLHTINDKVAKFQVPSKE 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,107
Number of Sequences: 59808
Number of extensions: 177415
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)