Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0516
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.56 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.56 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 13   INFRPVLSDKWFFYITNEVKRVNKLTSTKILIKILKHIN 129
            +++ P+L+D W      EV++ + LT+  +L  + K+ N
Sbjct: 1149 LHYEPILADMWRSVDEMEVRKTSALTT--VLTGLRKYTN 1185


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 13   INFRPVLSDKWFFYITNEVKRVNKLTSTKILIKILKHIN 129
            +++ P+L+D W      EV++ + LT+  +L  + K+ N
Sbjct: 1145 LHYEPILADMWRSVDEMEVRKTSALTT--VLTGLRKYTN 1181


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +3

Query: 297 CETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRH 449
           CE C     +   L    K H N    +  N   A  Y  S +  L  Y H
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 309 KKLEQHVESLQEDFK 353
           KKLEQ ++ LQE  +
Sbjct: 140 KKLEQAIQQLQEQLQ 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,048
Number of Sequences: 438
Number of extensions: 1904
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)