Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0516
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 32 0.23
At1g35620.1 68414.m04425 thioredoxin family protein similar to S... 29 1.2
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 28 2.8
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 3.7
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 3.7
At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden... 28 3.7
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 8.7
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 31.9 bits (69), Expect = 0.23
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 179 GYKRYYKIHFNFKW*KQFMCFNIFISI--FVEVSLLTLFTSLVI*KNHLSLNT 27
G K+ + NF W KQ M N FI + FV++ L+ L T V + + NT
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNT 533
>At1g35620.1 68414.m04425 thioredoxin family protein similar to
SP|Q43116 Protein disulfide isomerase precursor (PDI)
(EC 5.3.4.1) {Ricinus communis}; contains Pfam profile
PF00085: Thioredoxin
Length = 440
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +3
Query: 297 CETCKKLEQHVESLQEDFKKHLNAMSVKTVN----SHLARLYNPSKEPALIFYRHGVALL 464
C CK+L +++ K + + +N S LAR P L+ Y HGV +
Sbjct: 61 CGHCKRLNPELDAAAPILAKLKQPIVIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPME 120
Query: 465 YSG 473
Y G
Sbjct: 121 YYG 123
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 288 KQNCETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARL 407
K+N E KL Q E L+ED K A+ + HL +L
Sbjct: 121 KENVEVSDKLHQCNEQLKEDKVKRWEALQEISTTQHLLKL 160
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 99 NTYKNIKAHKLLLPFEIKMNFVIPFVSLLL 188
N K+ K HKLL E++ NFVI F L
Sbjct: 365 NICKSTKVHKLLNCIEVECNFVICFTCATL 394
>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 816
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -2
Query: 224 IEQTLRSYIITPK*KGYKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFTSLVI*KN 45
I +T++ YI TPK GY+ + F + F + + I E L + + N
Sbjct: 440 IPRTVKDYIATPKPNGYQSLHTTVIPFLYESM---FRLEVQIRTEEMDLIAERGIAVYYN 496
Query: 44 HLSLNTGL 21
SL+TGL
Sbjct: 497 GKSLSTGL 504
>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 883
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -2
Query: 224 IEQTLRSYIITPK*KGYKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFTSLVI*KN 45
I +T++ YI TPK GY+ + F + F + + I E L + + N
Sbjct: 440 IPRTVKDYIATPKPNGYQSLHTTVIPFLYESM---FRLEVQIRTEEMDLIAERGIAVYYN 496
Query: 44 HLSLNTGL 21
SL+TGL
Sbjct: 497 GKSLSTGL 504
>At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 884
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -2
Query: 224 IEQTLRSYIITPK*KGYKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFTSLVI*KN 45
I +T++ YI TPK GY+ + F + F + + I E L + + N
Sbjct: 441 IPRTVKDYIATPKPNGYQSLHTTVIPFLYESM---FRLEVQIRTEEMDLIAERGIAVYYN 497
Query: 44 HLSLNTGL 21
SL+TGL
Sbjct: 498 GKSLSTGL 505
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 128 FMCFNIFISIFVEVSLLTLFTSLV 57
F C NIF S+ V SL+ + SLV
Sbjct: 493 FFCLNIFFSVSVIESLMMVVASLV 516
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,878,914
Number of Sequences: 28952
Number of extensions: 122618
Number of successful extensions: 309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -