Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0515
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    33   0.024
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    27   1.6  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   2.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   2.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.3  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    25   8.4  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 192  GDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGTSLADMM 353
            G Y ++ GNT +G+  +K Y  +  + FN + L S  V +NL++     L+D +
Sbjct: 884  GKYLILTGNTDKGILQLKKYSLSSEEDFNSNGL-SRTVSLNLLLYERIQLSDAL 936


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 284 RIEELRCGCQFDYW 325
           RIEE+RC CQ+  W
Sbjct: 6   RIEEIRCLCQYKLW 19


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 308 IHNVALQFANIKNINDIRWVTFDVV 234
           + N+AL FAN+ + + I W  +D V
Sbjct: 501 LRNIALFFANLLSTDSIGWEVYDCV 525


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 228 GVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIG 326
           G+  + GY TN+  +FN S L S +  +N   G
Sbjct: 148 GMGFVSGYYTNLTPVFNSSILFSSITKINFSRG 180


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/62 (22%), Positives = 22/62 (35%)
 Frame = -1

Query: 215 TGNQFVITRGPSL*KHHPIYKF*TICEYHXXXXXXXXXXXXXXXLPPFPSSCLFYIQFSC 36
           TG+  +   GPS    + ++   T+CE+                  PF S   FY+    
Sbjct: 277 TGSVSLAWNGPSALDAYTVFAIETLCEFLSESAVSPFGQTFVEIEDPFCSFVYFYVSLRV 336

Query: 35  NC 30
            C
Sbjct: 337 PC 338


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 387 EFRYLKHFHDHMDLVAHIPVRNI----GTIAGNLMLKHDNR 497
           +F YL+H  +  D   H   R +    G+I   L+ +++NR
Sbjct: 329 KFNYLQHLRNKRDEAVHAEKRRLLDIRGSIHDRLVCRYENR 369


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 336 SLADMMELFLKLSSSNEEFRYLKHFH 413
           SLA  +EL  KL +  ++  YL  FH
Sbjct: 16  SLASAIELTFKLENQEKQCYYLDSFH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,874
Number of Sequences: 5004
Number of extensions: 40401
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)