Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0515
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 53 1e-07
SB_21837| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 29 1.6
SB_32634| Best HMM Match : Phage_holin_3 (HMM E-Value=4.8) 28 3.7
SB_27711| Best HMM Match : Phage_holin_3 (HMM E-Value=6.3) 28 3.7
SB_39511| Best HMM Match : rve (HMM E-Value=0.0016) 28 3.7
SB_44035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7) 27 6.5
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 27 8.6
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 53.2 bits (122), Expect = 1e-07
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 201 KLIAGNTGQGVYHIKGYPTNVIDIFNVSEL-KSYVVDVNLIIGAGTSLADMMELFLKLSS 377
K++ GNTG+G+Y G ID+ NV EL ++ VD ++G G +L ++EL S
Sbjct: 377 KMVGGNTGKGIYKKDGPFDVFIDVNNVLELHRTTEVDGYFVVGGGVTLGSLIELSEANVS 436
Query: 378 SNEEFRYLKHFHDHMDLVAHIPVRN 452
+ FR + +H+ +VA+ PVRN
Sbjct: 437 KSPVFRAIA---EHLKVVANTPVRN 458
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +3
Query: 303 VDVNLIIGAGTSLADMMELFLKLSSSNEEFRYLKHFHDHMDLVAHIPVRNIGTIAGNLML 482
VD ++G +L ++EL S + F + +H+ +VA+ PVRN+G+IAGN+ML
Sbjct: 460 VDGYFVVGGSVTLGSLIELSEANVSKSPVFPAIA---EHLKVVANTPVRNVGSIAGNMML 516
Query: 483 KHDN 494
HD+
Sbjct: 517 AHDH 520
>SB_21837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +3
Query: 201 KLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGTSLADMMELFLKLSSS 380
+++AGNTG+G++ +G + IDI +V EL+ ++++ ++ + E+ S
Sbjct: 71 RMMAGNTGKGIFKDEGPVSVYIDINDVPELQKHLINNSI-----DEIHLKSEIRPSKLSK 125
Query: 381 NEEFRYLKHFHDHMDLVAHIPVRNIGTIAGNLMLKHDN 494
+E + + + I ++ + TIAGNLML HD+
Sbjct: 126 SEIRAQIVNSISKIRQSTEIIIKTLSTIAGNLMLAHDH 163
>SB_68| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 429 VAHIPVRNIGTIAGNLMLKHDN 494
VA++PVRN+ T+ GNLML HD+
Sbjct: 86 VANVPVRNVATVGGNLMLTHDH 107
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 183 WPTGDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGT 335
W DY G+T Y +P + F L S + D N I+G+ T
Sbjct: 1189 WTVFDYSFPQGSTNVREYPSSSHPVFDVKTFQNMYLYSNITDSNYILGSST 1239
>SB_32634| Best HMM Match : Phage_holin_3 (HMM E-Value=4.8)
Length = 346
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 183 WPTGDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGT 335
W DY L G+T Y +P + F L S + N I+G+ T
Sbjct: 219 WTVFDYSLPKGSTNVREYSSSSHPVFDVKTFQNMYLYSNITASNYILGSST 269
>SB_27711| Best HMM Match : Phage_holin_3 (HMM E-Value=6.3)
Length = 327
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 183 WPTGDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGT 335
W DY L G+T Y +P + F L S + N I+G+ T
Sbjct: 219 WTVFDYSLPKGSTNVREYSSSSHPVFDVKTFQNMYLYSNITASNYILGSST 269
>SB_39511| Best HMM Match : rve (HMM E-Value=0.0016)
Length = 850
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 183 WPTGDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGT 335
W DY L G+T Y +P + F L S + N I+G+ T
Sbjct: 742 WTVFDYSLPKGSTNVREYSSSSHPVFDVKTFQNMYLYSNITASNYILGSST 792
>SB_44035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 183 WPTGDYKLIAGNTGQGVYHIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGT 335
W DY L G+T Y +P + F L S + N I+G+ T
Sbjct: 122 WTVFDYSLPKGSTNVREYPSSSHPVFDVKTFQNMYLYSNITASNYILGSST 172
>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
Length = 2372
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 273 FNVSELKSYVVDVNL-IIGAGTSLADMMELFLKLSSSNEEFRYLKH 407
FNVS + VNL + +ADM+EL L S S E+R H
Sbjct: 1712 FNVS-CGTITQRVNLSFVRLTIQMADMVELLLSYSESKNEYRQKNH 1756
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 237 HIKGYPTNVIDIFNVSELKSYVVDVNLIIGAGTSLADMME 356
H+ V+D+ EL+SYV++ N++ SLA + E
Sbjct: 815 HMDSLVAQVLDMDICKELESYVIEYNVLREEDLSLASVEE 854
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,408
Number of Sequences: 59808
Number of extensions: 299106
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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