Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0514
         (596 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NDF6 Cluster: Arginyl-tRNA synthetase; n=3; Cyanobact...    32   8.9  

>UniRef50_Q7NDF6 Cluster: Arginyl-tRNA synthetase; n=3;
           Cyanobacteria|Rep: Arginyl-tRNA synthetase - Gloeobacter
           violaceus
          Length = 601

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 80  LLLETPQCNSRRTSLLTH*CFYQFITLSFDSWQ-TIYLFHAKLSVS-FYEHEHVVDLLAE 253
           L LETPQ  +    LL     Y+F  +     + T Y +     VS FYEH  ++  LAE
Sbjct: 506 LWLETPQERTLALRLLAAPDEYRFAAVDRTPQRLTQYAYDLASDVSQFYEHCPILPPLAE 565

Query: 254 DLEPA 268
           +LEPA
Sbjct: 566 NLEPA 570


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,217,052
Number of Sequences: 1657284
Number of extensions: 7521995
Number of successful extensions: 13300
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13299
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)