Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0514
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168...    27   8.6  

>11_01_0214 -
           1682731-1682744,1683597-1683640,1684284-1684372,
           1684461-1684505,1685044-1685073,1685189-1685296,
           1685380-1685465,1686180-1686267,1687494-1687694,
           1687885-1687960,1688040-1688089,1688180-1688242,
           1688322-1688398,1688893-1688953,1689377-1689417,
           1690005-1690086
          Length = 384

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 165 SILGKLFICFTPSYLCLFTSMNTSSIC*QKI*NPLRRRAKTTNALRT 305
           S+L   F+C  P Y+ +  ++NT S   Q    P  +RA T N L T
Sbjct: 304 SMLKNNFVCKLPVYMVVQVTINTCSFILQNNSVPQHQRA-TANGLAT 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,096
Number of Sequences: 37544
Number of extensions: 204752
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)