Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0514
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20)                 30   1.6  
SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21)                 30   1.6  
SB_54439| Best HMM Match : SNF (HMM E-Value=0)                         29   2.9  
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)                 29   3.8  
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.6  
SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)                     28   6.6  

>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 197 AKLSVSFYEHEHVVDLLAEDLEPAPQTR*NNECAADRCLFHKKIN 331
           AKL+++   +E  V  L ++LE   +T  NN    D C F KK+N
Sbjct: 403 AKLNLTTTNYEEKVTTLEKELEELKRTGINNRNITDNC-FWKKVN 446


>SB_46086| Best HMM Match : RVT_1 (HMM E-Value=1.6e-20)
          Length = 723

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L++  A+ R++A +L    Q++C+
Sbjct: 524 HILLDKLKSLNVETALLRWVAAFLQGRSQSVCL 556


>SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21)
          Length = 479

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L++  A+ R++A +L    Q++C+
Sbjct: 191 HILLDKLKSLNVETALLRWVAAFLQGRSQSVCL 223


>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
          Length = 701

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L +  A+ R++A +L    Q++C+
Sbjct: 467 HILLDRLRSLYVETALLRWVAAFLQGGSQSVCL 499


>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L +  A+ R++A +L    Q++C+
Sbjct: 502 HILLDKLRSLYVETALLRWVAAFLQGRSQSVCL 534


>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
          Length = 595

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L +  A+ R++A +L    Q++C+
Sbjct: 315 HILLDKLRSLYVETALLRWVAAFLQGRSQSVCL 347


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  L++   + R++A +L    Q++C+
Sbjct: 343 HILLDKLKSLNVEMELLRWVAAFLQGRSQSVCL 375


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 191 FHAKLSVSFYEHEHVVDLLAEDLEPAPQTR 280
           +HAKLS+     EHVV + A DL+ A   R
Sbjct: 690 YHAKLSLDAPVLEHVVQVTATDLDTANNGR 719


>SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)
          Length = 485

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 HILIDALMLLSIYYAIFRFLANYLSVSRQAICV 213
           HIL+D L  + +  A+ R++A +L    Q++C+
Sbjct: 321 HILLDKLRSMYVETALLRWVAAFLQGRSQSVCL 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,626
Number of Sequences: 59808
Number of extensions: 245208
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)