Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0514
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp...    31   0.44 
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    31   0.44 

>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
           expressor of Pathogensis Related genes 5 (cpr5);
           regulator of disease resistance and senescence (Plant J.
           (2001)26(4)409-420.
          Length = 564

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 422 FLSTCPSSNTNTTKRVNACINRFRAPR*LNVLR 520
           + ST  +SN+N+TKRV   ++R R P  L + R
Sbjct: 72  YCSTSSTSNSNSTKRVTRVVHRLRNPMRLGMAR 104


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 447 TQTRLN-V*TRALTASAPPAN*TSCGVESNVFCRYDCVAPANRLNTNL 587
           TQTRL  V +  +  +APP+N        N+FC +    PAN  N+NL
Sbjct: 169 TQTRLGKVFSDIVAITAPPSNNNQTEASGNLFCPFS-PTPANVENSNL 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,682
Number of Sequences: 28952
Number of extensions: 167148
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)