Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0512
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    30   0.16 
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.85 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   1.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   2.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   6.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   7.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.9  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   7.9  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.9  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = +3

Query: 219 LARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQG 398
           LAR  NNS Y    +        ++    EL  K  +    D E  ++  +S   E   G
Sbjct: 30  LARYANNSNYRNDSLIR------KEMFVSELVLKEVQRIVDDSEIIKESDESWPPENKDG 83

Query: 399 LEELESKLSAYHVMVEKEVLG 461
            +ELE +++  H+M E   LG
Sbjct: 84  KQELEIRMNGKHIMFETCKLG 104


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 300 RKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKL 422
           RK L S S+ D SS  E D      R  EEM+ L ELE ++
Sbjct: 262 RKVLSSSSEDDESSSPE-DLLKPIIRSTEEMENLNELEQEV 301


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 300 RKELKSKSKRDHSSDGEYDRKHKDSR 377
           +K  KSK K + S DGE  +K K S+
Sbjct: 479 KKHKKSKRKSEESEDGESPKKKKKSK 504


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 380  NSTVLMLSIILSIRTMVSLGLAFQFFPQSISKFLVTN 270
            +  + +L  +LS  T  SLG+   FF +SI+ F  T+
Sbjct: 1973 SEAISLLERLLSSGTWASLGMKLSFFTKSITHFDATD 2009


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +3

Query: 225 RNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDG--EYDRKHKDSRIMEEMQG 398
           RN N     ++EI    +K  +   + E  + S +  + DG   Y     +      +Q 
Sbjct: 680 RNPNAETVKLEEIPY--NKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIYEGILQN 737

Query: 399 LEELESKLSAYHVMVEKEV 455
            +EL SKL AYH+   K +
Sbjct: 738 EKELRSKLEAYHINCNKVI 756


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 300 RKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLS 425
           ++ELK   K D     E D +++  ++ E  + L E  +KLS
Sbjct: 221 KRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLS 262


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 234  NNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHS 338
            NN E  + + EN+G KK R  ++ E       DHS
Sbjct: 899  NNKEVNLTKAENVGIKK-RRIMKNENNIYDFEDHS 932


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 258 EIENIGDKKLRDAL--RKELKSKSK 326
           ++ NIG KKLRDA+  R+ +K  SK
Sbjct: 266 DLWNIGRKKLRDAVEERRAVKDPSK 290


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 252 MQEIENIGDKKLRDALRKELKSKSKRDHSSD----GEYDRKHKDSRIMEEMQGLEELESK 419
           ++EIE    +K    L+K  + + KRD         E +R+ +++  + E    + LE+K
Sbjct: 573 LEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAK 632


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 222 PI*PFSYLLFLVLC 181
           PI PF+YL++L +C
Sbjct: 422 PIIPFAYLVYLAMC 435


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 13  QTMKKKFVTSSLKQRNTNVTARCKNLANNSS 105
           + +K+K  T  L ++ +NVT++ K+ A NSS
Sbjct: 421 RVLKEKLQTY-LDKKESNVTSKIKSTAENSS 450


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 264 ENIGDKKLRDALRKELKSKSKRDHSS 341
           E +G K+   A  +ELK +  RDH S
Sbjct: 14  ERLGQKRGLKASSQELKRQKTRDHKS 39


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 330 DHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVL 458
           D +S GE D  HK S I++    +   E + +  H++ E E L
Sbjct: 259 DGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,922
Number of Sequences: 5004
Number of extensions: 20075
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)