Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0512
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 225 RNTNNSEYTM-QEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGL 401
           R  N  +Y   Q+   +G K  R+A+++E +   +RD S        H D  I   ++  
Sbjct: 157 RQRNRCQYCRYQKCLAMGMK--REAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214

Query: 402 EELESKL 422
           + +E K+
Sbjct: 215 KRVECKM 221


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 225 RNTNNSEYTM-QEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGL 401
           R  N  +Y   Q+   +G K  R+A+++E +   +RD S        H D  I   ++  
Sbjct: 157 RQRNRCQYCRYQKCLAMGMK--REAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAE 214

Query: 402 EELESKL 422
           + +E K+
Sbjct: 215 KRVECKM 221


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 1   PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNS 102
           PK I ++  K + ++    N N      N  NN+
Sbjct: 312 PKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,338
Number of Sequences: 438
Number of extensions: 1519
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)