Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0512
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60030.1 68418.m07527 expressed protein 33 0.10
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 33 0.10
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 31 0.41
At4g40020.1 68417.m05666 hypothetical protein 30 0.71
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 29 1.2
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 2.2
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 28 2.9
At1g75730.1 68414.m08797 expressed protein 28 2.9
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 28 2.9
At1g20700.1 68414.m02594 homeobox-leucine zipper family protein ... 28 2.9
At5g53620.2 68418.m06662 expressed protein 28 3.8
At5g53620.1 68418.m06661 expressed protein 28 3.8
At4g00760.1 68417.m00106 two-component responsive regulator fami... 28 3.8
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 27 5.0
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 27 5.0
At3g29075.1 68416.m03637 glycine-rich protein 27 5.0
At1g13350.1 68414.m01550 protein kinase family protein contains ... 27 5.0
At5g53800.1 68418.m06685 expressed protein 27 6.6
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 27 6.6
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 27 6.6
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 27 6.6
At3g28770.1 68416.m03591 expressed protein 27 6.6
At1g51540.1 68414.m05801 kelch repeat-containing protein contain... 27 6.6
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 8.8
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 27 8.8
At5g27330.1 68418.m03263 expressed protein 27 8.8
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos... 27 8.8
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 33.1 bits (72), Expect = 0.10
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 225 RNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLE 404
+N + +E E + D++ +KE K K K D E +RK K R +E G E
Sbjct: 219 KNKDEDVVDEKEKEKLEDEQRSGERKKEKKKKRKSDEEIVSE-ERKSKKKRKSDEEMGSE 277
Query: 405 ELESK 419
E +SK
Sbjct: 278 ERKSK 282
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/51 (23%), Positives = 31/51 (60%)
Frame = +3
Query: 267 NIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESK 419
++ D+K+ + L E +S+ +R+ + + + +KD +++E + E+LE +
Sbjct: 127 DVVDEKVNEKLEAEQRSEERRERKKEKKKKKNNKDEDVVDE-KVKEKLEDE 176
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 33.1 bits (72), Expect = 0.10
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 216 KLARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDR--KHKDSRIMEE 389
+L+ +++++ +GDK DALR+ L S D S Y++ K +D+++ EE
Sbjct: 617 RLSLGGGSADFSKLMTPLVGDKDKGDALRRNLSDLSLTDDSKGKFYEKYMKKRDAKLREE 676
Query: 390 MQGLE-ELESKLSAYHVMVEK 449
+ E E+KL + +E+
Sbjct: 677 WSLKKGEKETKLKSMQEALEQ 697
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 31.1 bits (67), Expect = 0.41
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 216 KLARNTNNSEY--TMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEE 389
+L R + EY ++Q + K +RDA ++L+ ++ R + E ++ + R +EE
Sbjct: 401 RLIREQQDDEYVASLQADRDKEMKSIRDAEARQLEEETARKAFLEEEKKKEEEAQRKLEE 460
Query: 390 MQGLEELESKLSAYHVMVEKE 452
Q ELE +L A + KE
Sbjct: 461 EQ---ELERQLDAKEASLPKE 478
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 30.3 bits (65), Expect = 0.71
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +3
Query: 225 RNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSR 377
R+ N E +E+ + +KK+ + +KE K ++K++ + ++H + +
Sbjct: 378 RSLNRQESMPKEVVEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEKK 428
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 354 DRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVLGKRDARSP 482
D++H E +QG E ES L H EKE+L DA+ P
Sbjct: 434 DQEHGKRVFFEYLQG--EAESGLERLHQCAEKELLPYLDAKGP 474
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
profile PF05182: Fip1 motif
Length = 1192
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 354 DRKHKDSR--IMEEMQGLEELESKLSAYHVMVEKEVLGKRDARS 479
DRKHKDSR I E+ +G E L + V G DAR+
Sbjct: 976 DRKHKDSRRKIKEQREGTESLSKQGEQNGSSVVTGSKGTNDARN 1019
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
(IRX5) nearly identical to cellulose synthase
[Arabidopsis thaliana] GI:27462651; contains Pfam
profile PF03552: Cellulose synthase
Length = 1049
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 273 GDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKE 452
G K L L+K K+K K D + Y RK + E + LE++E L Y + +
Sbjct: 625 GIKSLFSKLKK--KTKKKSDDKTMSSYSRKRSST---EAIFDLEDIEEGLEGYDELEKSS 679
Query: 453 VLGKRD 470
++ +++
Sbjct: 680 LMSQKN 685
>At1g75730.1 68414.m08797 expressed protein
Length = 589
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +3
Query: 216 KLARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQ 395
KL + + ++EN KK +K LK + DH+S R R +E +
Sbjct: 45 KLKQEMSYDTLPSPDLENEVSKKKSKLPKKNLKDTNGVDHASVPRKLRSAMKKRNLESVS 104
Query: 396 GLEELESKLSAYHVMVEKEV 455
L + +L+ + E V
Sbjct: 105 KLSSVSKRLNRFKTGTESSV 124
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +3
Query: 228 NTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEE 407
N NN++Y E + K + KE + + +++ + +YD K+ E + ++
Sbjct: 153 NNNNNKYDANFKEEFNNNKYDENYAKEEFNNNNNNNNYNYKYDENVKEESFPENNEDNKK 212
Query: 408 LESKLSAYHVMVEKE 452
+AY +E+E
Sbjct: 213 NVYNSNAYGTELERE 227
>At1g20700.1 68414.m02594 homeobox-leucine zipper family protein
strong similarity to homeodomain protein PALE-2
(GI:20152544) [Arabidopsis thaliana]; contains Pfam
profile: PF00046 homeobox domain
Length = 211
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 300 RKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVL 458
+K+ K KSK D E R+M E Q +E L +++ Y V+ ++ VL
Sbjct: 4 KKKEKEKSKEIEEMDREIQNGAYSGRVMTEEQ-MEILRKQIAVYAVICDQLVL 55
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 303 KELKS-KSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVLGK 464
KEL + + +RDHS HK S + E +Q E S+L + + ++ +L K
Sbjct: 172 KELATFRRERDHSEAERSQNIHKISELQEHIQEKESQLSELQEQNRIAQETILYK 226
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 303 KELKS-KSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEVLGK 464
KEL + + +RDHS HK S + E +Q E S+L + + ++ +L K
Sbjct: 172 KELATFRRERDHSEAERSQNIHKISELQEHIQEKESQLSELQEQNRIAQETILYK 226
>At4g00760.1 68417.m00106 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 367
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 213 AKLARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEE 389
A+L +N NNSE ++++ K +D L + K K + D + GE+ K+ S + ++
Sbjct: 158 AELKKNNNNSEVETEDLD-----KYKDELGQGNKRKERAD-TDTGEHTEKNNGSDLGDQ 210
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 228 NTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQ 395
N + T ++ EN KKLR+A+ E K K + E +R+ K+ EEM+
Sbjct: 814 NERRLKETREKEEN--KKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMR 867
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 264 ENIGDKKLR---DALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELE 413
E +G+K+ R D L + ++ +R+H D E D +DS + + + E+LE
Sbjct: 66 ETVGEKRKRLAEDTLNR-IEEAKQREHEEDNEEDDDFRDSLVAKTLM-QEQLE 116
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 273 GDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSR 377
G+ D +K+ K + ++H D +YD K K +
Sbjct: 176 GNNSEDDEFKKKKKKEQYKEHHDDDDYDEKKKKKK 210
>At1g13350.1 68414.m01550 protein kinase family protein contains
protein kinase domain, Pfam:PF00069 (likely that this
cDNA contains a single unspliced intron. Putative intron
removed in this gene model.)
Length = 761
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 NTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKH--KDSRIMEEMQGL 401
N N + M+E E +G + + + L+K+L+S + G++ + ++ R E +
Sbjct: 57 NVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLGRNQRRERECEKR 116
Query: 402 EELE 413
+E+E
Sbjct: 117 KEIE 120
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 276 DKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKEV 455
++K R R+E K + DG+ RK K + E+++ ES Y ++ E ++
Sbjct: 143 EEKERKRRRREKDKKKRNKSDKDGDKKRKEKKKKKSEKVKKGAVTES-WGKYGIIRETDM 201
Query: 456 LGKR 467
KR
Sbjct: 202 WNKR 205
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 219 LARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQG 398
L+RNT + Y IEN+ + D ++ S + + G K + ++++++G
Sbjct: 476 LSRNTTSKVYPAMYIENVTELAFDDITPEDPDFSSIQGLAEAGLIASKLSNRDLLDDVEG 535
Query: 399 --LEELESKLSAYHVMVEKEVLGKR 467
L ES LS ++ K L KR
Sbjct: 536 TFLFSPESLLSRQDLISWKMALEKR 560
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 297 LRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGL 401
+ +E+KS+SK + SSD DR ++ E+ L
Sbjct: 777 MEEEIKSRSKPEDSSDKRLDRPGLKEKVEEKTSSL 811
>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 386
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 321 SKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVMVEKE 452
S DH G+ + + RI EEM+ LE+KL++ M E
Sbjct: 251 SSLDHVKRGDEEDQIGILRIKEEMEAKRMLENKLTSMTTMFSSE 294
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 288 RDALRKELKSKSKRDHSSDGEYDRKHKD 371
RD ++ LK KR HSS G+ D+K D
Sbjct: 212 RDRDQEGLKDNWKRRHSSSGDKDQKDGD 239
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +3
Query: 225 RNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQ 395
+ + E +E + DKK + +E KSK +++ S D + +K ++++ +E +
Sbjct: 1018 KKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESE 1074
>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 1036
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 276 DKKLRDALRKELKSKSKRDHSSDGEYDRKHK-DSRIMEEMQGLEELESKLSAYHVMVEKE 452
D+ ++ L E + K + + + E +++ D R+ + +EE+ KL + VEK
Sbjct: 550 DRSKKEELVHEDEEKQRSNENLCSEAEKEEDIDERLKQRKLAIEEIALKLETRVMEVEKR 609
Query: 453 VL-GKRD 470
+ G+RD
Sbjct: 610 LCQGRRD 616
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 216 KLARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQ 395
K A++ E +E + DK+ ++ +K+ K K+D E +RK K+ R +E +
Sbjct: 70 KAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERK-EKERKEKE-RKAKEKK 127
Query: 396 GLEELES 416
EE E+
Sbjct: 128 DKEESEA 134
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 276 DKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEEMQGLEELESK 419
DK+ ++ KE K K K+D + D++ K+ E+ + +E + K
Sbjct: 82 DKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDK 129
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 276 DKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSRIMEE 389
DK+ R+ K+ K +SK E KHKD + E+
Sbjct: 23 DKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEK 60
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 216 KLARNTNNSEYTMQEIENIGDKKLRDALRKELKSKSKRDHSSDGEYDRKHKDSR---IME 386
K++RN+N + Q+I+N K + S DH S E + K + +
Sbjct: 5 KVSRNSNGASNEQQQIQNQSVPVTSQKSTKLSRESSMEDHDSSEEKFQNLKSLNAILLKQ 64
Query: 387 EMQGLEELESKLSA 428
M+ +++ES A
Sbjct: 65 TMEKRQQIESLFQA 78
>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
phosphatidylinositol transfer-like protein, putative
similar to phosphatidylinositol transfer-like protein
III (GI:14486705) [Lotus japonicus]; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminu
Length = 612
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 282 KLRDALRKELKSK-SKRDHSSDGEYDRKHKDSRIMEEMQGLEELESKLSAYHVM 440
K LR LK K S R SSD + +D +EE++ ++E + L + +++
Sbjct: 51 KASSKLRHSLKKKGSSRRRSSDRTFSLTIEDIHDVEELRAVDEFRNLLVSENLL 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,310,283
Number of Sequences: 28952
Number of extensions: 105380
Number of successful extensions: 594
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -