Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0510
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   150   1e-37
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   1.2  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   2.8  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   3.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   3.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   3.7  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   8.4  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  150 bits (363), Expect = 1e-37
 Identities = 68/110 (61%), Positives = 81/110 (73%)
 Frame = +1

Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
           +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE T D
Sbjct: 16  TGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFECTDD 75

Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDD 501
           ITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+
Sbjct: 76  ITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDE 125


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 481 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 356
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 15  CRN-SARGSVVLNNERRIVRREHTKWLQRDPAT 110
           C N S+RG  V+N+ER +        LQ  P T
Sbjct: 357 CHNCSSRGPFVINSERTVYNNYQRITLQESPGT 389


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 256 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 390
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 422 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 258
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  GSVVLNNERRIVRREHTKWLQRDPATD 113
           G+  LNN++R +  +HT W     A+D
Sbjct: 258 GTFTLNNQKRPISVDHTLWANTVLASD 284


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 455 VSADPLSPPTVENLTAIGVLLPMDSNTL 372
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 235 LQDVNFLDEMSSFDRERIPERVVHAKGAGA 324
           +  V+  + + ++++E+  E + H K AGA
Sbjct: 270 ITSVSEFEALQAYEKEKFQEMIKHVKDAGA 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,068
Number of Sequences: 5004
Number of extensions: 40634
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)