Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0510
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 135 2e-32
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 134 4e-32
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 129 1e-30
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 0.91
06_01_0376 + 2709254-2711267,2711311-2711450 30 1.2
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 4.8
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 28 4.8
05_03_0586 + 15782645-15782721,15782781-15783405 28 4.8
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 27 8.5
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 27 8.5
03_06_0053 - 31304153-31304752,31304844-31304930 27 8.5
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 135 bits (327), Expect = 2e-32
Identities = 63/108 (58%), Positives = 81/108 (75%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+FEVTHD
Sbjct: 21 SGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHD 80
Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
I+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT
Sbjct: 81 ISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYT 128
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 134 bits (324), Expect = 4e-32
Identities = 63/108 (58%), Positives = 80/108 (74%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEVTHD
Sbjct: 21 SGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHD 80
Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
IT + A + G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT
Sbjct: 81 ITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYT 128
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 129 bits (312), Expect = 1e-30
Identities = 61/108 (56%), Positives = 77/108 (71%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
+GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE THD
Sbjct: 33 AGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHD 92
Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
+T + A S G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT
Sbjct: 93 VTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYT 140
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 0.91
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 202 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 381
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 382 -ESIG 393
E IG
Sbjct: 91 KEQIG 95
>06_01_0376 + 2709254-2711267,2711311-2711450
Length = 717
Score = 29.9 bits (64), Expect = 1.2
Identities = 32/105 (30%), Positives = 43/105 (40%)
Frame = -3
Query: 443 PLSPPTVENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDD 264
PLS P L A LP+ + LAAL L+ S P P P RS SL +
Sbjct: 48 PLSLPAARRLAAAFPPLPLLLSLLAALRLLPS------PPPPRPFDALIRS-YASLPRPS 100
Query: 263 ISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKXRRIL*SFL 129
+++ L AG + P+V + D + RR L S L
Sbjct: 101 LAAAALAFAASAG-YAPSVPAYNAVLLALSDASLPSARRFLSSML 144
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 217 KNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFG 330
KNG ++LQ V+ + S D ++I + H G G FG
Sbjct: 397 KNGGSILQKVDNIMIFSKDDLKKITKNNSHVIGQGGFG 434
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 141 KDSPGFHHH*---IWSSCWNQNGDTNG 212
+D+ GF H +S CWN+ GDT G
Sbjct: 1025 EDNSGFDPHWGCVFFSFCWNEGGDTRG 1051
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 314 PLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLV 165
P+ C + + +++ DD + FLPT C ++L+ GAP L+
Sbjct: 143 PIVCCSSACWKAVGHDDQQCGHCPGQRRG--FLPTGCCSLLLSIGAPSLL 190
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 227 GPFLPTVCIAVLIPTGAPDLVVMKXRRIL*SFL 129
GPF P + +A+ P G PD +V ++ SF+
Sbjct: 151 GPF-PDLPLAICFPEGQPDSIVQDIENMVRSFI 182
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 27.1 bits (57), Expect = 8.5
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -3
Query: 383 SNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVC 204
+N+L A ++V+S TS P PL T R + +SS + PF P+
Sbjct: 35 TNSLLAEWVVISRDTSFSLADPTPLKPTVRLDWYFMLSAAVSSSAMIVATATIPFFPSFH 94
Query: 203 IAVLIPTGAPDLVVM 159
P G P VV+
Sbjct: 95 RPRFRPGGLPRRVVV 109
>03_06_0053 - 31304153-31304752,31304844-31304930
Length = 228
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 502 HHQYRTLQQNLEGHEQY--QQIHSLHQLLRI 416
H+ TL+ + HE+ QQ+H LH+L RI
Sbjct: 9 HYDKDTLKMAMLKHEETFRQQVHELHRLYRI 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,700
Number of Sequences: 37544
Number of extensions: 286015
Number of successful extensions: 736
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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