Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0510
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.34 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   7.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 499 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 404
           HQ +  QQ+L+ HEQ+       Q     QQS
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 502 HHQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 404
           H Q +  Q   +  +Q+ Q H  H + +  QQS
Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQS 210


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 125 VNELVSSWVSLKPFCMFPSYYA 60
           +  L S+ V+L   C +PSYY+
Sbjct: 621 IPSLNSTNVTLSTKCPYPSYYS 642


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 101 VSLKPFCMFPSYYAA 57
           V ++P CM P Y  A
Sbjct: 47  VGMRPECMVPEYQCA 61


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  DPATDQLINYKKTLKDSPGFHHH*IWSSCWN 191
           DP  D +  Y   LK+ P  + H  W++  N
Sbjct: 440 DPNGDYIRRYLPVLKNFPTRYIHEPWNAPLN 470


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 LGLSEAILYVPFLLCGVRCLIPRSLV 28
           LG+S  +  V FLL   + L P SLV
Sbjct: 267 LGISILLSLVVFLLLVSKILPPTSLV 292


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  NNERRIVRREHTKWLQRDPATDQLINYKKTLKDSP 152
           +N R  V+RE  K     P+T+ L     TL+ +P
Sbjct: 328 SNSRCSVKREKIKISVSYPSTETLNTKCNTLERTP 362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 214 PPFVSPF*FQQEL 176
           PP + PF FQ+ L
Sbjct: 610 PPIIEPFTFQEGL 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,963
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)