Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0510
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2... 137 3e-33
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P... 135 2e-32
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 123 8e-29
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 123 8e-29
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro... 30 0.76
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 29 2.3
At4g03000.2 68417.m00408 expressed protein contains similarity t... 27 5.4
At4g03000.1 68417.m00407 expressed protein contains similarity t... 27 5.4
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)... 27 5.4
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 27 5.4
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 27 5.4
At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containi... 27 7.1
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr... 27 7.1
At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont... 27 9.4
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 27 9.4
At1g05090.1 68414.m00512 dentin sialophosphoprotein-related cont... 27 9.4
>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
GI:2511725 from [Arabidopsis thaliana]
Length = 492
Score = 137 bits (332), Expect = 3e-33
Identities = 65/108 (60%), Positives = 82/108 (75%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
SGAPV + TVG GP LL+D + L+++++FDRERIPERVVHA+GA A G+FEVTHD
Sbjct: 21 SGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHD 80
Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
IT+ ++A G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT
Sbjct: 81 ITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYT 128
>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
SP:P25819, GI:17865693 from [Arabidopsis thaliana]
Length = 492
Score = 135 bits (326), Expect = 2e-32
Identities = 63/108 (58%), Positives = 81/108 (75%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
SGAPV + TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEVTHD
Sbjct: 21 SGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHD 80
Query: 352 ITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
I+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT
Sbjct: 81 ISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYT 128
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 123 bits (296), Expect = 8e-29
Identities = 57/107 (53%), Positives = 77/107 (71%)
Frame = +1
Query: 175 GAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDI 354
GAPV + T+G+ GP LL+D + ++++++F RERIPERVVHA+G A G+FEVTHDI
Sbjct: 22 GAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVHARGISAKGFFEVTHDI 81
Query: 355 TKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
+ + A + G +TP+ VRFSTV E S +T+RD RGFAVKFYT
Sbjct: 82 SNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVKFYT 128
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 123 bits (296), Expect = 8e-29
Identities = 57/107 (53%), Positives = 77/107 (71%)
Frame = +1
Query: 175 GAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDI 354
GAPV + T+G+ GP LL+D + ++++++F RERIPERVVHA+G A G+FEVTHDI
Sbjct: 22 GAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVHARGISAKGFFEVTHDI 81
Query: 355 TKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYT 495
+ + A + G +TP+ VRFSTV E S +T+RD RGFAVKFYT
Sbjct: 82 SNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVKFYT 128
>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to SAC domain protein 2
(SAC2) GI:31415720
Length = 808
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 502 HHQYRTLQQNLEGHEQYQQIHSLHQ-LLRI*QQSVSFCLWTQIL 374
H R L N+EGH Y+ + ++ L R + +V C+WT L
Sbjct: 177 HTLQRNLSNNVEGHTYYESMFVWNEYLTRRIRNNVKDCMWTVAL 220
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 174 WSSCWNQNGDTNGGQEWS 227
WS WN NG T EWS
Sbjct: 868 WSDGWNNNGGTKEKNEWS 885
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 174 WSSCWNQNGDTNG-GQEWSS 230
WS W+ NG TNG QE SS
Sbjct: 901 WSDGWDNNGGTNGINQEGSS 920
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 323 APAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMK 156
APAP+A +SG K +S++ A P+ T + + IP D +++K
Sbjct: 417 APAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYDAT--LGIYIPRNKRDELILK 470
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 323 APAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMK 156
APAP+A +SG K +S++ A P+ T + + IP D +++K
Sbjct: 417 APAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYDAT--LGIYIPRNKRDELILK 470
>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 526
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 287 IRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGA 177
+R S D++++ L + N+ GP + I VL+P G+
Sbjct: 119 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGS 155
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 287 IRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGA 177
+R S D++++ L + N+ GP + I VL+P G+
Sbjct: 201 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGS 237
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 499 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQ 407
HQ + QQ + H Q QQ++ L Q R+ QQ
Sbjct: 359 HQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQ 389
>At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 602
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 5 SPGLQEFGTRLRGIKQRTPHSKK--GTYKMASERP 103
S G+ + RL + PHSKK TY+ A + P
Sbjct: 507 SKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVDAP 541
>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
protein / kinesin motor family protein
Length = 919
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 172 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 351
+G P ++ A++ +NG L+ D +F D + + +R+ K FE
Sbjct: 65 AGVPGRVRVAVRLRPRNGEELIADADFAD---CVELQPELKRLKLRKNNWDTDTFEFDEV 121
Query: 352 ITKYSAAK-VFESIGK 396
+T+Y++ K V+E + K
Sbjct: 122 LTEYASQKRVYEVVAK 137
>At4g20720.1 68417.m03011 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 729
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 253 LDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIG 393
+DE F + +R +K +FG FE D + S++K ES G
Sbjct: 301 VDESFGFFEGKDAQRTSSSKDDESFGMFEGKKDAQRNSSSKEDESFG 347
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 311 LACTTRSGIRSLSKDDISSRKLTSCN 234
+A TR I+++SKDDIS+ + C+
Sbjct: 468 IAGKTRDEIKNMSKDDISNDPVAMCD 493
>At1g05090.1 68414.m00512 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 706
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 253 LDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIG 393
+DE F + +R +K +FG FE D + S++K ES G
Sbjct: 278 VDESFGFFEGKDAQRTSSSKDDESFGMFEGKKDAQRNSSSKEDESFG 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,741
Number of Sequences: 28952
Number of extensions: 222541
Number of successful extensions: 600
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -