Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0509
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)          201   2e-52
SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      130   4e-31
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)          103   7e-23
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   2e-18
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   2e-09
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           46   1e-05
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   46   1e-05
SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)            43   1e-04
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)                    29   1.1  
SB_16335| Best HMM Match : Fels1 (HMM E-Value=9.9)                     28   2.6  
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             28   3.4  
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       27   7.8  

>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score =  201 bits (491), Expect = 2e-52
 Identities = 88/126 (69%), Positives = 103/126 (81%)
 Frame = +3

Query: 30  VAKRCKYLPEDDLRELCNIVCDLLLEEPNXXXXXXXXXXCGDIHGQFYDLEELFHIGGQV 209
           +AK C+YLPE+DL++LC+ VC+LLLEE N          CGDIHGQFYDLEELF  GGQV
Sbjct: 10  IAKECEYLPENDLKKLCDYVCELLLEESNVQPVSSPVTVCGDIHGQFYDLEELFRTGGQV 69

Query: 210 PYTKYIFMGDYVDRGYYSLETLTLLMALKARYPDRIILLRGNHETCQITKVYGFYDECLN 389
           P T Y+FMGD+VDRGYYSLET T L+ LKA++PDRI LLRGNHE+ QIT+VYGFYDEC +
Sbjct: 70  PNTSYVFMGDFVDRGYYSLETFTRLLTLKAKWPDRITLLRGNHESRQITQVYGFYDECQS 129

Query: 390 KYGNAN 407
           KYGNAN
Sbjct: 130 KYGNAN 135


>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  130 bits (314), Expect = 4e-31
 Identities = 61/129 (47%), Positives = 80/129 (62%)
 Frame = +3

Query: 9   LQEFGTRVAKRCKYLPEDDLRELCNIVCDLLLEEPNXXXXXXXXXXCGDIHGQFYDLEEL 188
           L+  G+R  K  + L E ++R LC    ++ L +P           CGDIHGQ+YDL  L
Sbjct: 17  LEVRGSRPGKNVQ-LTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRL 75

Query: 189 FHIGGQVPYTKYIFMGDYVDRGYYSLETLTLLMALKARYPDRIILLRGNHETCQITKVYG 368
           F  GG  P + Y+F+GDYVDRG  SLET+ LL+A K +YP+   LLRGNHE   I ++YG
Sbjct: 76  FEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYG 135

Query: 369 FYDECLNKY 395
           FYDEC  +Y
Sbjct: 136 FYDECKRRY 144


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score =  103 bits (246), Expect = 7e-23
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = +3

Query: 42  CKYLPEDDLRELCNIVCDLLLEEPNXXXXXXXXXXCGDIHGQFYDLEELFHIGGQVPYTK 221
           CK L E  ++ LC    ++L +E N          CGD+HGQF+DL ELF IGG+ P T 
Sbjct: 21  CKQLTEAQVKTLCEKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTN 80

Query: 222 YIFMGDYVDRGYYSLETLTLLMALK 296
           Y+FMGDYVDRGYYS+ET+TLL+ LK
Sbjct: 81  YLFMGDYVDRGYYSVETVTLLVTLK 105


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 41/81 (50%), Positives = 53/81 (65%)
 Frame = +3

Query: 147 CGDIHGQFYDLEELFHIGGQVPYTKYIFMGDYVDRGYYSLETLTLLMALKARYPDRIILL 326
           CGDIHGQFYDL +LF +GG    T+Y+F+GDYVDRGY+S+E L         Y + + LL
Sbjct: 86  CGDIHGQFYDLVKLFEVGGSPATTRYLFLGDYVDRGYFSIECL---------YTNTLFLL 136

Query: 327 RGNHETCQITKVYGFYDECLN 389
           RGNHE   +T+ + F  E  N
Sbjct: 137 RGNHECRHLTEYFTFKTESAN 157


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +3

Query: 51  LPEDDLRELCNIVCDLLLEEPNXXXXXXXXXXCGDIHGQFYDLEELFHIGGQVPYTKYIF 230
           LPE  +R++C +  ++ L++P            GDIHGQ+ DL   F   G  P   YIF
Sbjct: 32  LPEAQIRQICQVSREIFLQQPMLLEIGAPINIFGDIHGQYEDLLRHFDKLGYPPNESYIF 91

Query: 231 MGDYVDR 251
           +GDYVDR
Sbjct: 92  LGDYVDR 98


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = +3

Query: 210 PYTKYIFMGDYVDRGYYSLETLTLLMALKARYPDRIILLRGNHE 341
           P   YIF GD VDRG  S+E   +L A    YP+ + + RGNHE
Sbjct: 6   PENPYIFNGDLVDRGPRSIEICIILFAFTILYPNGVYINRGNHE 49


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +3

Query: 66  LRELCNIVCDLLLEEPNXXXXXXXXXXCGDIHGQFYDL----EELFHIGGQVPYTKYIFM 233
           L  +C  + ++++EEP            GD+HG F DL    + L+ +G  +  + ++F+
Sbjct: 649 LLSVCRSLREVVMEEPRMLRVQSPVYVLGDLHGNFRDLVCFEKLLWRMGPVLTPSNFLFL 708

Query: 234 GDYVDRGYYSLE 269
           GDYVDRG   +E
Sbjct: 709 GDYVDRGENGVE 720


>SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)
          Length = 250

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +3

Query: 150 GDIHGQFYDLEELFHIGGQVPYTKYIFMGDYVDRGYYSLETLTLLMALKARYPDRIILLR 329
           GDIHG    L++LF         K IF+GDYVD    S  T+  L+ +  ++    I ++
Sbjct: 9   GDIHGGLRALQQLFERAEITINDKLIFLGDYVDGWSESAATIQFLIEIAEKHD--CIFIK 66

Query: 330 GNHE 341
           GNH+
Sbjct: 67  GNHD 70


>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
          Length = 491

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 72  PVGHLPGGICISLQPSCRIP 13
           PV HLPGG C SL+P   +P
Sbjct: 405 PVTHLPGGQCQSLRPVPHLP 424


>SB_16335| Best HMM Match : Fels1 (HMM E-Value=9.9)
          Length = 301

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 49 YLHLFATLVPNSCSPG 2
          YLHL AT VP  C PG
Sbjct: 30 YLHLLATEVPPDCDPG 45


>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1057

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 51 LPEDDLRELCNIVCD 95
          +PEDDL+E C  +CD
Sbjct: 10 VPEDDLKEACACICD 24


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 186 APLNHRTVHEYHHKPSQVSVP 124
           +P+N    H+YHH+PS  S P
Sbjct: 366 SPINIIIAHQYHHRPSISSSP 386



 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 162 HEYHHKPSQVS 130
           H+YHH PS +S
Sbjct: 471 HQYHHYPSSIS 481



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 180 LNHRTVHEYHHKPS 139
           +N    H+YHH PS
Sbjct: 425 INIIITHQYHHHPS 438


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 162 HEYHHKPSQVSVPAEH*VLQVTNHKLYCTVPVGHLPGGI 46
           H Y HK + +     H +LQV++   + +  + HLP  I
Sbjct: 709 HTYRHKSAGIRHLPSHIILQVSHIYRHTSAGISHLPSQI 747


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 150 HKPSQVSVPAEH*VLQVTNHKLYC 79
           +KPS V+ P  H +L+ T   LYC
Sbjct: 240 YKPSIVTSPRNHSILEGTRLSLYC 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,171
Number of Sequences: 59808
Number of extensions: 232907
Number of successful extensions: 655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)