Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0508
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 92 2e-20
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 45 3e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 44 5e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 41 4e-05
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 29 0.16
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 1.5
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 26 1.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 23 1.6
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 2.0
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 2.6
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 3.5
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 3.5
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 3.5
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 3.5
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 25 3.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 24 6.1
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 24 6.1
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 24 6.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 23 8.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 23 8.1
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 23 8.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 23 8.1
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 91.9 bits (218), Expect = 2e-20
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = +2
Query: 152 ASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
A FLGLDNAGKTTLLHMLK+DRLA PTLHPTSEEL+IG++RFTTFDLGG
Sbjct: 21 AKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGG 73
Score = 30.3 bits (65), Expect = 0.070
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 91 MFILDWFTGVLGFLGLWKKSGKLLVSG 171
MFI++WF L LGL K K+L G
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLG 27
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 44.8 bits (101), Expect = 3e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++GK +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG
Sbjct: 12 LFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGG 70
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 44.0 bits (99), Expect = 5e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LGLDNAGKTT+L L ++ + + PT L + +RFT +D+GG
Sbjct: 22 LGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGG 69
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.1 bits (92), Expect = 4e-05
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LGLD AGKTT+L+ LK ++ +PT+ E ++ +++F +D+GG
Sbjct: 27 LGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGG 74
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 29.1 bits (62), Expect = 0.16
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 281 YCLLTVPRM*DVK*VHVEQVYHLSTYVRVLSSLHCQVPETKSLPDFFHR 135
YC L ++ D+ H +V+ + + S++H Q TK+ F H+
Sbjct: 145 YCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQTQFLHQ 193
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 1.5
Identities = 9/49 (18%), Positives = 25/49 (51%)
Frame = +2
Query: 65 IVQFNYIQKCLSSTGSLECWDFLVYGKSRASSWFLGLDNAGKTTLLHML 211
I++ ++ +++ + W +L++ K SW L++ +L ++L
Sbjct: 744 IIRSQWVMDSVNNQRLMPQWSYLLFSKDEKYSWKTALESLSAKSLSNLL 792
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 170 GLDNAGKTTLLHMLKDDRLAQH 235
GLD +GK+T +L D ++QH
Sbjct: 14 GLDRSGKSTQCQLLVDKLISQH 35
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 23.0 bits (47), Expect(2) = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 170 GLDNAGKTTLLHML 211
GL AGKTTL H++
Sbjct: 423 GLAGAGKTTLAHVI 436
Score = 21.0 bits (42), Expect(2) = 1.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 113 LECWDFLVYGKSR 151
++ WD V+GKSR
Sbjct: 379 IKAWDPCVFGKSR 391
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 56 VINIVQFNYIQKCLSSTGSLECWDFLVYGKSRASSW 163
+I+ Q N + C S G + WD KS SW
Sbjct: 61 IISCDQLNGVITC-GSEGEIHLWDIRSQAKSAVRSW 95
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 212 KDDRLAQHVPTLH----PTSEELSIGSMRFTTF 298
KD +A+HV LH +SE L+IG + F F
Sbjct: 520 KDRNIARHVINLHTNLQESSETLAIGEIPFDKF 552
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 24.6 bits (51), Expect = 3.5
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +2
Query: 128 FLVYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTF 298
F+V GK A +G AGKTTLL++ LAQ V T T + L G +TF
Sbjct: 907 FVVPGKLTA---LMGESGAGKTTLLNV-----LAQRVDTGVVTGDMLVNGRGLDSTF 955
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 276 PIDSSSDVGCKVGTC*ASLSSFNICKSVVFPALSS 172
P SD G T +SLS+FN C S+ F + +S
Sbjct: 436 PSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNS 470
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 164 TKSLPDFFHRPRNPNTPVNQ---SRINIFEYN 78
++S P P +PNTPV + RINI +++
Sbjct: 34 SRSTPQITGSPLDPNTPVKRLFFMRINIAQFS 65
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 3.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 107 GSLECWDFLVYGKSRASSWFLGLDNAGKTTLLHMLKD 217
GS++ VY + R ++ + G D G+ +LL+ L+D
Sbjct: 122 GSIQGPFAFVYYQVRTNTLWWGRDRLGRRSLLYSLRD 158
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 190 LPCI-VKSQKPRACPTFSIDQEIPTL 116
LP I QKP++ P FS++ ++P L
Sbjct: 42 LPAIPFTKQKPKSPPFFSLNAKVPVL 67
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 23.8 bits (49), Expect = 6.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTL 199
+YGK + F+G +AGK+TL
Sbjct: 233 MYGKEHVNIVFIGHVDAGKSTL 254
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 149 RASSWFLGLDNAGKTTLLHMLKD 217
R +F+G+ N GK+++L+ L++
Sbjct: 145 RVYVYFVGMPNTGKSSILNSLRN 167
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 23.8 bits (49), Expect = 6.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 167 LGLDNAGKTTLLHML 211
+GL NAGK+TLL+ L
Sbjct: 242 VGLPNAGKSTLLNCL 256
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 23.4 bits (48), Expect = 8.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 219 SSFNICKSVVFPALSSPRNQELARLFP*TKKSQHSSEPVED 97
SS N V + S Q LARL +++ SS+P+ED
Sbjct: 153 SSLNTASHEVPSSKSDVNVQMLARLKSKSRQKISSSDPLED 193
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 155 LPDFFHRPRNPNTPVNQS 102
LP F P + ++PVNQS
Sbjct: 82 LPSFLAPPNDKDSPVNQS 99
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.4 bits (48), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 56 VINIVQF-NYIQKCLSSTGSLECW 124
++ IV F NY+ + + S SLE W
Sbjct: 193 IVEIVNFFNYLPQTVISKSSLEIW 216
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 23.4 bits (48), Expect = 8.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Frame = +2
Query: 101 STGSLECWDFLVYGKSRASSWFLGLDNAGKTTLL--------HMLK-DDRLAQHVPTLHP 253
ST SLEC+ VY R++ + N + L + LK + L QH+P +HP
Sbjct: 606 STASLECFRIFVY---RSALFAFNKSNVHEIIQLLNEPVKYHNFLKPSEALLQHLPLIHP 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,699
Number of Sequences: 5004
Number of extensions: 22924
Number of successful extensions: 84
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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