Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0508
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_214| Best HMM Match : Arf (HMM E-Value=0)                           61   2e-10
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         48   1e-06
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   6e-06
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         46   8e-06
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         45   1e-05
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         38   0.002
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.009
SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                  33   0.062
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.082
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         32   0.082
SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)                    28   1.8  
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         27   3.1  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                27   3.1  
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   3.1  
SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05)                  27   4.1  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 27   4.1  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      26   7.2  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         26   7.2  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_214| Best HMM Match : Arf (HMM E-Value=0)
          Length = 148

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +2

Query: 224 LAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
           +AQHVPTLHPTSEELS+G MRFTTFDLGG
Sbjct: 1   MAQHVPTLHPTSEELSMGGMRFTTFDLGG 29


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = +2

Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
           +GLDNAGKTT+L+ LK + +   VPTL    E ++  ++ FT +D+GG
Sbjct: 2   IGLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGG 49


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = +2

Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
           ++GK +     +GLD AGKTT+L+ LK   +   +PT+    E +   ++ FT +D+GG
Sbjct: 12  LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGG 70


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 22/57 (38%), Positives = 33/57 (57%)
 Frame = +2

Query: 140 GKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
           GK       +GLD AGKTT+L+ LK D     +PT+    E +   +++FT +D+GG
Sbjct: 87  GKDELRLLMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGG 143


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 34/59 (57%)
 Frame = +2

Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
           ++GK       +GLD AGKTT+L+ LK   +   +PT+    E +   ++ FT +D+GG
Sbjct: 12  LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 128 FLVYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELS-IGSMRFTTFDL 304
           F  +G  +     LGLD AGKTT+L+ LK       +PT+    E L    ++  T +D+
Sbjct: 12  FSEFGNRQVRIVMLGLDAAGKTTILYKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWDV 71

Query: 305 GG 310
           GG
Sbjct: 72  GG 73


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL-SIGSMRFTTFDLGG 310
           LGLDN+GKTT+L  L  + +    PT     + + S G  R   +D+GG
Sbjct: 23  LGLDNSGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWDIGG 71


>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 155 SSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMR 286
           S WF GL  AGKTTL   L+D    Q +P      + +  G  R
Sbjct: 78  SVWFTGLSGAGKTTLSMALEDYLCRQGIPAYTLDGDNMRTGLNR 121


>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 122 WDFLVYGKSRASSWFLGLDNAGKTTLLHMLK 214
           W +L + K       LGLDNAGKTTLL  +K
Sbjct: 13  WKYL-FQKDEYFILILGLDNAGKTTLLEQIK 42


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL-SIGSMRFTTFDLGG 310
           LGLD +GKT++L+  K       VPT     E +     +RF  +D+GG
Sbjct: 27  LGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGG 75


>SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)
          Length = 193

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 131 LVYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 277
           L+Y +SR +S    +D      +LH++  D L   +  L   S++L IG
Sbjct: 90  LIYSRSRGASRVFRVDPLSPDKMLHVVIGDDLVNTLLELRYWSKKLDIG 138


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 188 KTTLLHMLKDDRLAQHVPTLHPTSEELS-IGSMRFTTFDLGG 310
           KTT+L+ LK       VPT+    E +S   ++ F+ +D+GG
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGG 163


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 164 FLGLDNAGKTTLLHMLKDD 220
           F+G+ N GKTTLL+ L+ +
Sbjct: 5   FVGVSNIGKTTLLNQLRQE 23


>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1266

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 137 YGKSRASSWFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTSEELSI 274
           YG +R S+WF  L   G + +L    D  L  + +  LHP+ +   I
Sbjct: 9   YGSARCSNWFSYLFMCGVSRILKKGYDHHLNEEDLDPLHPSDDSRPI 55


>SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05)
          Length = 485

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 222 LSSFNICKSVVFPALSSPRNQELARLFP*TKKSQ 121
           +S  +IC  ++  A S+ +NQE   + P TK+ Q
Sbjct: 378 ISKDHICSGLIALASSNDKNQEFGLIAPLTKRLQ 411


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 294 VVKRILPIDSSSDVGCKVG 238
           ++ R+ PIDSSS+ G K G
Sbjct: 628 IIDRVPPIDSSSEAGAKPG 646


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI 274
           +G+   GKTTLL  LK   L  ++ T+    +E S+
Sbjct: 672 VGIQGYGKTTLLAALKGQPLPSNLSTVGIVVDEWSV 707


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +2

Query: 44  PLD*VINIVQFNYIQKCLSSTGSLECWDFLVYGK------SRASSWFLGLDNAGKTTLLH 205
           P+D    +V    I +  S     E W++ + G+      S + SW L   N  +T L++
Sbjct: 744 PIDAYFTLVPSEIIYRYASKNVEFE-WEYAIVGEKDKAFASHSPSWDLYAVNNQRTQLIY 802

Query: 206 MLKDDRLAQHVPTLHP 253
             K++    HV +  P
Sbjct: 803 EDKEEGWRSHVASTCP 818


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 170 PETKSLPDFFHRPRNPNTPVNQS 102
           P T S P   H P  P+TP   S
Sbjct: 443 PSTPSTPSLTHTPSTPSTPSTPS 465



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 170 PETKSLPDFFHRPRNPNTPVNQS 102
           P T S P   H P  P+TP   S
Sbjct: 667 PSTPSTPSLTHTPSTPSTPSTPS 689


>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 255 VGCKVGTC*ASLSSFNICKSVVFPALSSPRNQELARLFP 139
           +GC V  C  +L  F+ CK    P  ++   + L R+FP
Sbjct: 597 LGCNVARCLMTLFEFDDCKEGGRPKAAAAA-EALKRIFP 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,769
Number of Sequences: 59808
Number of extensions: 169431
Number of successful extensions: 407
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)