Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0508
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58748-6|AAB52968.1| 193|Caenorhabditis elegans Hypothetical pr... 96 4e-21
AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylat... 46 7e-06
AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylat... 46 7e-06
AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical ... 45 1e-05
U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylati... 45 1e-05
Z49967-8|CAA90255.1| 180|Caenorhabditis elegans Hypothetical pr... 44 2e-05
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 42 9e-05
U70852-7|AAK29813.1| 179|Caenorhabditis elegans Adp-ribosylatio... 42 1e-04
Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical pr... 41 2e-04
Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z50044-1|CAA90353.2| 184|Caenorhabditis elegans Hypothetical pr... 34 0.018
Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical pr... 34 0.024
AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G... 34 0.024
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 32 0.073
AF025450-5|AAO38669.1| 363|Caenorhabditis elegans Skn-1 depende... 29 0.90
AC024812-5|AAF59556.1| 191|Caenorhabditis elegans Hypothetical ... 28 1.2
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z83117-3|CAB05570.2| 356|Caenorhabditis elegans Hypothetical pr... 27 2.1
AY008137-1|AAG32090.1| 356|Caenorhabditis elegans heterotrimeri... 27 2.1
AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical... 27 2.8
Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 27 3.6
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 27 3.6
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 27 3.6
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 3.6
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 27 3.6
AF125963-4|AAD14745.2| 408|Caenorhabditis elegans F-box a prote... 27 3.6
AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormo... 27 3.6
Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical pr... 26 6.4
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 26 6.4
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 26 6.4
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 26 6.4
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 26 6.4
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 26 6.4
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 26 6.4
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ... 26 6.4
Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical pr... 25 8.4
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 25 8.4
AY669394-1|AAU05399.1| 487|Caenorhabditis elegans aromatic L-am... 25 8.4
AY669393-1|AAU05398.1| 478|Caenorhabditis elegans aromatic L-am... 25 8.4
AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical... 25 8.4
AF047651-8|AAV58886.1| 514|Caenorhabditis elegans Biogenic amin... 25 8.4
AF047651-7|AAC02721.2| 523|Caenorhabditis elegans Biogenic amin... 25 8.4
>U58748-6|AAB52968.1| 193|Caenorhabditis elegans Hypothetical
protein ZK180.4 protein.
Length = 193
Score = 96.3 bits (229), Expect = 4e-21
Identities = 41/49 (83%), Positives = 47/49 (95%)
Frame = +2
Query: 164 FLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
FLGLDNAGKTTLLHMLKDDR+AQHVPTLHPTSE++S+G + FTT+DLGG
Sbjct: 26 FLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGG 74
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 94 FILDWFTGVLGFLGLWKKSGKLLVSG 171
F+ DWF GVL LGL K GKL+ G
Sbjct: 3 FLWDWFNGVLNMLGLANKKGKLVFLG 28
>AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylation
factor related(20.5 kD) (arf-3) protein.
Length = 180
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++GK + +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG
Sbjct: 12 LFGKRQVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
>AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 3 protein.
Length = 180
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++GK + +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG
Sbjct: 12 LFGKRQVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
>AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical
protein Y116A8C.12 protein.
Length = 175
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++GK LGLD AGKTT+L+ LK + +PT+ E ++ +++F +D+GG
Sbjct: 8 IFGKKELRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNIKFNVWDVGG 66
>U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.2 protein.
Length = 181
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++GK +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG
Sbjct: 12 LFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
>Z49967-8|CAA90255.1| 180|Caenorhabditis elegans Hypothetical
protein F54C9.10 protein.
Length = 180
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 134 VYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
++G LGLD AGKTT+L+ L+ + +PT+ E++ +++F +DLGG
Sbjct: 11 LFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGG 69
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 140 GKSRASSWFLGLDNAGKTTLLHMLK--DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
GK + +GLDN+GKTT+L+ LK + R Q VPT+ S ++ F FD+ G
Sbjct: 14 GKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAG 72
>U70852-7|AAK29813.1| 179|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.1 protein.
Length = 179
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LGLD AGKTT+L+ LK + +PT+ E ++ + T +D+GG
Sbjct: 23 LGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGG 70
>Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical
protein ZK632.8 protein.
Length = 178
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
+GLDNAGKTT+L+ + PT+ EE+S ++ F +D+GG
Sbjct: 23 VGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDIGG 70
>Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical
protein F19H8.3 protein.
Length = 184
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTL-HPTSEELSIGSMRFTTFDLGG 310
LGLDNAGKTT+L L + + PT ++G +R +D+GG
Sbjct: 23 LGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGG 71
>Z50044-1|CAA90353.2| 184|Caenorhabditis elegans Hypothetical
protein F22B5.1 protein.
Length = 184
Score = 34.3 bits (75), Expect = 0.018
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LGLDNAGKTTL+ D+ PTL + + + +D+GG
Sbjct: 22 LGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGG 69
>Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical
protein Y57G11C.13 protein.
Length = 185
Score = 33.9 bits (74), Expect = 0.024
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 122 WDFLVYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQH-VPTLHPTSEELSIGSMRFTTF 298
W ++ K +GL N+GKTT ++++ + + +PT+ +++ G++ +
Sbjct: 11 WIRSLFWKEEMELTLVGLQNSGKTTFVNVIASGQFTEDMIPTVGFNMRKITKGNVTIKLW 70
Query: 299 DLGG 310
D+GG
Sbjct: 71 DIGG 74
>AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G
protein indispensablefor equal chromosome segregation
protein.
Length = 185
Score = 33.9 bits (74), Expect = 0.024
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 122 WDFLVYGKSRASSWFLGLDNAGKTTLLHMLKDDRLAQH-VPTLHPTSEELSIGSMRFTTF 298
W ++ K +GL N+GKTT ++++ + + +PT+ +++ G++ +
Sbjct: 11 WIRSLFWKEEMELTLVGLQNSGKTTFVNVIASGQFTEDMIPTVGFNMRKITKGNVTIKLW 70
Query: 299 DLGG 310
D+GG
Sbjct: 71 DIGG 74
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.073
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLK----DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LGLD AGKT+++ LK D +A H PT+ E + + R +D+GG
Sbjct: 375 LGLDGAGKTSIVRRLKKVQMDTVMAPH-PTIGFNIETIHYKNYRLNFWDVGG 425
>AF025450-5|AAO38669.1| 363|Caenorhabditis elegans Skn-1 dependent
zygotic transcriptprotein 5 protein.
Length = 363
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 209 TYVRVLSSLHCQVPETKSLPDFFHRPRNPNTPVNQSRINIFE 84
TY RVLS + +++ F H P N VN ++FE
Sbjct: 153 TYTRVLSGISYTNVSAQNILKFKHMPDNNKNYVNMEDFDVFE 194
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 209 TYVRVLSSLHCQVPETKSLPDFFHRPRNPNTPVNQSRINIFE 84
TY RVLS + +++ F H P N V ++FE
Sbjct: 281 TYTRVLSGISYTNVSAQNILKFKHMPDNNKNYVKIEHFDVFE 322
>AC024812-5|AAF59556.1| 191|Caenorhabditis elegans Hypothetical
protein Y54E10BR.2 protein.
Length = 191
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 277
+GLDNAGKTT L K + L+P+ ++G
Sbjct: 23 VGLDNAGKTTFLEQTK-SHFVKDYGVLNPSKITATVG 58
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 167 LGLDNAGKTTLLHML-KDDRLAQHVP--TLHPTSEELSIGSMRF 289
LGL N GK+T ++L K + A++ P T+ P +++ RF
Sbjct: 27 LGLPNVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRF 70
>Z83117-3|CAB05570.2| 356|Caenorhabditis elegans Hypothetical
protein M04C7.1 protein.
Length = 356
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = +2
Query: 2 RNILQISAKTRDTLP-LD*VINIVQFNY----IQKCLSSTGSLECWDFLVYGKSRASSWF 166
++IL ++ ++D +P + N ++ + +QK + D LVY +
Sbjct: 106 QHILSLADSSKDAMPFIPLTFNAIKRLWHDPVVQKTFERRAEFQMMDTLVYFMNE----- 160
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LD + + DD L +PT+ + + I +F +D+GG
Sbjct: 161 --LDRINNADYIPTV-DDMLRIRIPTMGVVQQTIEIKGTKFRIYDVGG 205
>AY008137-1|AAG32090.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = +2
Query: 2 RNILQISAKTRDTLP-LD*VINIVQFNY----IQKCLSSTGSLECWDFLVYGKSRASSWF 166
++IL ++ ++D +P + N ++ + +QK + D LVY +
Sbjct: 106 QHILSLADSSKDAMPFIPLTFNAIKRLWHDPVVQKTFERRAEFQMMDTLVYFMNE----- 160
Query: 167 LGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGG 310
LD + + DD L +PT+ + + I +F +D+GG
Sbjct: 161 --LDRINNADYIPTV-DDMLRIRIPTMGVVQQTIEIKGTKFRIYDVGG 205
>AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical
protein Y102A5C.19 protein.
Length = 301
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 17 ISAKTRDTLPLD*VINIVQFNYIQKCLSSTGSLECWDFLVYGKSRASSWF 166
++ +++ +P+ ++N QF+ K L++ +LE D L+ + S +F
Sbjct: 201 LNNRSKFLIPIKHIVNFTQFDINVKDLTTDDALEIRDILIKSLTLESGYF 250
>Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical
protein F09C6.2 protein.
Length = 313
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 219 SSFNICKSVVFPALSSPRNQELARLF 142
S+F C S+VF SP N ELA++F
Sbjct: 230 STFKSC-SIVFNKFESPSNIELAKVF 254
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -1
Query: 200 RVLSSLHCQVPETKSLPDFFHRPRNPNTPVNQSRINIFEY 81
+++ +H +P +KSL + ++RPR N + +SR+ + Y
Sbjct: 364 QLIPIMHICLPISKSLDEAYYRPR-VNYMLGKSRLALLSY 402
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 116 ECWDFLVYGKSRASSWFLGLDNAGKTTLLHMLKDDR 223
+ +D ++ K R + LG NAGK+TLL L ++
Sbjct: 150 DTFDVEIHLKLRPNIGLLGFPNAGKSTLLKALVPEK 185
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 137 YGKSRASSWFLGLDNAGKTTLLHML 211
Y KS +G AGKTTLL+ML
Sbjct: 57 YAKSGELLALMGASGAGKTTLLNML 81
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 173 VPETKSLPDFFHRPRNPNTPVNQSRINIF 87
+P T P F P++ NTP+ + N+F
Sbjct: 36 IPSTPGTPTAFQPPQHANTPIPGIQPNLF 64
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 122 WDFLVYGKSRASSWFLGLDNAGKTTLLH 205
W+ ++GKS S++L L+N + ++H
Sbjct: 840 WNDQIHGKSGQQSFYLVLENLNENLIIH 867
>AF125963-4|AAD14745.2| 408|Caenorhabditis elegans F-box a protein
protein 214 protein.
Length = 408
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/43 (25%), Positives = 28/43 (65%)
Frame = +2
Query: 8 ILQISAKTRDTLPLD*VINIVQFNYIQKCLSSTGSLECWDFLV 136
I+++ A ++P+D +I++ F+ + L++TG+++ D +V
Sbjct: 259 IVKVKAPYHLSVPIDNIIHLTHFDIPVEKLTTTGAMKIHDAIV 301
>AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 41 protein.
Length = 160
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 173 VPETKSLPDFFHRPRNPNTPVNQSRINIF 87
+P T P F P++ NTP+ + N+F
Sbjct: 78 IPSTPGTPTAFQPPQHANTPIPGIQPNLF 106
>Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical
protein T14G10.1 protein.
Length = 652
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 161 WFLGLDNAGKTTLLHMLK 214
WF GL AGKTT+ L+
Sbjct: 60 WFTGLSGAGKTTISFALE 77
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 95 LSSTGSLECWDFLVYGKSRASSWFL 169
L G +E WD V G RA W +
Sbjct: 204 LRKIGKMETWDNWVKGMRRAGEWIM 228
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 107 GSLECWDFLVYGKSRASSWFL 169
G L C F+ Y KS W L
Sbjct: 1125 GQLSCGHFIAYAKSNEDKWLL 1145
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 107 GSLECWDFLVYGKSRASSWFL 169
G L C F+ Y KS W L
Sbjct: 1128 GQLSCGHFIAYAKSNEDKWLL 1148
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 95 LSSTGSLECWDFLVYGKSRASSWFL 169
L G +E WD V G RA W +
Sbjct: 204 LRKIGKMETWDNWVKGMRRAGEWIM 228
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 107 GSLECWDFLVYGKSRASSWFL 169
G L C F+ Y KS W L
Sbjct: 1125 GQLSCGHFIAYAKSNEDKWLL 1145
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 95 LSSTGSLECWDFLVYGKSRASSWFL 169
L G +E WD V G RA W +
Sbjct: 199 LRKIGKMETWDNWVKGMRRAGEWIM 223
>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
protein F56H1.5 protein.
Length = 1015
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 107 GSLECWDFLVYGKSRASSW 163
G + WD+ VYG + + SW
Sbjct: 892 GHSKKWDYFVYGNNASESW 910
>Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical
protein F26D10.11 protein.
Length = 229
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 256 CRM*SRYMLSKSIIFQHM*ECCLPCIVKSQKPRACPTFS 140
C++ Y+L+ ++F + CCL + +KP P S
Sbjct: 154 CQIRWPYLLAMVLVFDQLCLCCLGFALALKKPPKIPELS 192
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 167 LGLDNAGKTTLLHMLKDD 220
+G + AGKTTLL +L DD
Sbjct: 529 VGENGAGKTTLLKLLLDD 546
>AY669394-1|AAU05399.1| 487|Caenorhabditis elegans aromatic L-amino
acid decarboxylase protein.
Length = 487
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 143 KSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVP 241
K +A+ FLG + TL + +K+DR ++P
Sbjct: 253 KLKATRGFLGNYGVSRETLQNAIKEDRARGYIP 285
>AY669393-1|AAU05398.1| 478|Caenorhabditis elegans aromatic L-amino
acid decarboxylase protein.
Length = 478
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 143 KSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVP 241
K +A+ FLG + TL + +K+DR ++P
Sbjct: 244 KLKATRGFLGNYGVSRETLQNAIKEDRARGYIP 276
>AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical
protein B0205.11 protein.
Length = 276
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3
Query: 201 KSVVFPALSSPRNQELAR 148
K ++ P L++PR++ELAR
Sbjct: 224 KQMISPTLTTPRDEELAR 241
>AF047651-8|AAV58886.1| 514|Caenorhabditis elegans Biogenic amine
synthesis relatedprotein 1, isoform a protein.
Length = 514
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 143 KSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVP 241
K +A+ FLG + TL + +K+DR ++P
Sbjct: 244 KLKATRGFLGNYGVSRETLQNAIKEDRARGYIP 276
>AF047651-7|AAC02721.2| 523|Caenorhabditis elegans Biogenic amine
synthesis relatedprotein 1, isoform b protein.
Length = 523
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 143 KSRASSWFLGLDNAGKTTLLHMLKDDRLAQHVP 241
K +A+ FLG + TL + +K+DR ++P
Sbjct: 253 KLKATRGFLGNYGVSRETLQNAIKEDRARGYIP 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,626,106
Number of Sequences: 27780
Number of extensions: 123740
Number of successful extensions: 403
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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