Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0507
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 85 6e-18
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.30
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 1.6
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 27 1.6
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 2.1
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 3.7
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 4.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 6.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 6.4
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 6.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 6.4
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 84.6 bits (200), Expect = 6e-18
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = -2
Query: 422 VETLRQKAEAD-KNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDED 246
+ L++K E + D++VKDL +LYETALLSSGFTLD+P +A RI R+I LGL IDE+
Sbjct: 618 IAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEE 677
Query: 245 EPIQVEEPASGDVPPLEGDADDASRMEEVD 156
E +EE ++ V E +A+ S+MEEVD
Sbjct: 678 EEAPIEEISTESV-AAENNAE--SKMEEVD 704
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.30
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 239 IQVEEPASGDVPPLEGDADDASRMEEVD 156
IQ + P D PP++ DAD+ EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = -2
Query: 407 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 228
Q AE + + ++ +L+ + + + +D ++ + ++ I ED+ +VE
Sbjct: 22 QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81
Query: 227 EPASGDVPPLEGDADDASRMEE 162
+P SG+ L + D+ + E+
Sbjct: 82 KPVSGNQFSLLSEEDEVDKKEK 103
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 195 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 305
L+W I RS N+N ++ Q HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 2.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 419 ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 249
E+ R+K E+DKN ++ K + E+ G + D V R+YR G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 370 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 221
+IL+ + PC +RL PK +L VS++ L ++SR L S+
Sbjct: 83 KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 153 LINLLHARCIIGITLQWRHISRSRLFNLNRLIF 251
LI LH R ++G++L+ H+S F L IF
Sbjct: 632 LILQLHLRRVLGLSLKLYHLSILYFFELISSIF 664
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 6.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 403 KRKPTRMTKLLRILLSYCMKLPCCLLASRLMSPKSML 293
K P+ +T RILLSY M LP C + +L+ ++ L
Sbjct: 972 KTIPSVLTAQTRILLSY-MLLPECDIDVQLLKKRNSL 1007
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 24.6 bits (51), Expect = 6.4
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 407 QKAEADKNDKAVKDLVILLYETALLS-SGFTLDEPQVHASRIYRMIKLGLGI 255
Q ++ D ND+ +DLV ++ A+ S + PQ+ I +++ G+GI
Sbjct: 473 QMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQI--EHILPLLRRGIGI 522
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 6.4
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -2
Query: 317 LDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD*DLYFN 138
+DE + ++ Y ++K G +++ + + D + GDA+ M +D +LY
Sbjct: 477 IDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDEMDIPGDANMEEYMRAMDEELYGG 536
Query: 137 CR 132
R
Sbjct: 537 LR 538
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 319 VKPEDSRAVSYNKITR 366
VK EDSR YN +TR
Sbjct: 39 VKTEDSRVYYYNSVTR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,006
Number of Sequences: 5004
Number of extensions: 28279
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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